Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1194 ATGTCCCTTGAGGATTCTTTAAGATCTCTTTCCCTCGACTATCTCAACCTCCTCATCAACGGCCAGGCCTTCAGTGACGTCACCTTCAGCGTTGAGGGTCGTCTCGTCCACGCTCATCGCTGCATACTCGCTGCTCGGAGCCTCTTCTTCAGGAAATTCTTCTGCGCACCGGAGCCTCCGCTGGGGCTGGAACATGCGGGTTCTCGGGTCAACTCGGCTGGCTCGGGCCAAAGGTCAGGGATCATTCCTGTGAACTCTGTCGGTTACGAAGTGTTCCTGTTGCTTCTTCAGTTCCTGTACAGCGGTCAGGTCTCTATTGTGCCTCAGAAGCACGAGCCGCGGCCCAATTGTGGGGAGCGAGGATGTTGGCATACGCATTGCACCTCCGCCGTTGATCTTGCCCTTGACACTCTCGCCGCCGCTAGATCTTTCGGTGTCGAACAGCTTGCATTGCTCACCCAGAAACAGTTGGTGAGTATGGTAGAGAAGGCGTCGATTGAAGATGTAATGAAAGTGCTGGTGGCATCAAGAAAGCAAGACATGCACCAGCTTTGGGCCACTTGCTCCCAACTGGTTGCCAAGTCAGGTCTCCCACCCGAAGTCCTGGCCAAACACCTCCCCATCGACGTCGTTGCCAAGATTGAAGAGATTCGCCTCAAGTCCTCCTTCACCCGCCGCTCTCTATTGCCCTACCACCATCCCGACCTCCGCGTTGCAGACCTCGAGGACCAGAAAATCCGGCGAATGAAACGAGCACTCGACGCCTCCGATGTGGAGCTCGTTAAGCTCATGGTAATGGGGGAAGGCCTAAATCTTGATGAAGCATTGGCCTTGCATTATGCTGTAGAGAATTGCAGCCGAGAAGTGGTGAAGGCATTGTTGGAGCTCGGGGCCGCTGATGTGAACTACCCAGCCGGGCCTGCCGGGAAAACTCCGCTCCACATTGCATCAGAAATGATATCGCCGGACATGGTGGCAGTGCTGTTGGACCACCATGCTGATCCGAACGTGCGGATGGTGGATGGTGTGACCCCACTGGACATTCTGAGAACCCTAACTTCAGATTTTCTGTTCAAAGGGGCCGTACCGGGGCTAACCCACATAGAACCCAACAAGCTGAGGCTGTGCTTGGAACTGGTTCAATCGGCGGCACTTGTGATTTCTCGCGAAGAAGGAAATGCTAACAATCCTCCCACATCAACGGCCATATATCCGCCACCGAGTGAGGATCATAGCAGTGGCAGCAGCAGCAACCTGAACCTGGACTCTAGGTTGGTGTATCTGAATCTAGGCGCTGCGGCGGTGTCGGGTCAAATAGTTTCCAGATTGGACGGAGATGACGATTGCCACAGGGATCCCATGAACCGTCATGGTTCACAAGGAGGTGGTGGATGTGACCCAACAATGTACCACCACCACCACCACTCTCATGATTTCTAG 1440 0.5451 MSLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCAPEPPLGLEHAGSRVNSAGSGQRSGIIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARSFGVEQLALLTQKQLVSMVEKASIEDVMKVLVASRKQDMHQLWATCSQLVAKSGLPPEVLAKHLPIDVVAKIEEIRLKSSFTRRSLLPYHHPDLRVADLEDQKIRRMKRALDASDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIASEMISPDMVAVLLDHHADPNVRMVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVISREEGNANNPPTSTAIYPPPSEDHSSGSSSNLNLDSRLVYLNLGAAAVSGQIVSRLDGDDDCHRDPMNRHGSQGGGGCDPTMYHHHHHSHDF 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1194 479 MobiDBLite consensus disorder prediction 391 417 - -
Acco06g1194 479 ProSiteProfiles BTB domain profile. 25 108 IPR000210 GO:0005515
Acco06g1194 479 ProSiteProfiles Ankyrin repeat region circular profile. 308 338 - -
Acco06g1194 479 Gene3D Potassium Channel Kv1.1; Chain A 4 194 IPR011333 -
Acco06g1194 479 SMART BTB_4 25 161 IPR000210 GO:0005515
Acco06g1194 479 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 474 IPR044284 GO:0099402
Acco06g1194 479 FunFam regulatory protein NPR5 isoform X2 239 356 - -
Acco06g1194 479 CDD BTB_POZ_NPR_plant 8 161 - -
Acco06g1194 479 SUPERFAMILY Ankyrin repeat 267 351 IPR036770 -
Acco06g1194 479 MobiDBLite consensus disorder prediction 450 479 - -
Acco06g1194 479 FunFam regulatory protein NPR5 isoform X1 4 194 - -
Acco06g1194 479 Pfam Ankyrin repeats (3 copies) 257 338 IPR002110 GO:0005515
Acco06g1194 479 SMART ANK_2a 273 303 IPR002110 GO:0005515
Acco06g1194 479 SMART ANK_2a 308 337 IPR002110 GO:0005515
Acco06g1194 479 Pfam BTB/POZ domain 16 109 IPR000210 GO:0005515
Acco06g1194 479 ProSiteProfiles Ankyrin repeat profile. 308 340 IPR002110 GO:0005515
Acco06g1194 479 SUPERFAMILY POZ domain 9 190 IPR011333 -
Acco06g1194 479 Gene3D - 241 356 IPR036770 -
Acco06g1194 479 Pfam Domain of unknown function (DUF3420) 196 249 IPR024228 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1194 Acco-ChrAcco06 8228596 8231039 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Acco06g1194 BTB 3.2e-14 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1044 02 7427855 7430100 Acco06g1194 06 8228596 8231039 CCT
Acco06g1194 06 8228596 8231039 Acco06g1194 06 8228596 8231039 ECH