Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1173 ATGAAGATTGATAAAGAAAGCTCGTGTTGGGCTAGCTCTGGGATTCCAAATAAACCCTCATCTCCGTGCGAGTTGCGACATCTCTTCCCGTTTCTCGTCACCGCACATCCGTCTTCATCCCCACCAGTCTTCGCTGCCCCTTTTGTTGAACTACACCGCCGCCATCAGCTGCCCCTAGTTCTTCTCCGACTTGTTAAGGTGACCCGCATTATGGAAGTCGATGAGGAACAGACTACGTCAACTGTTTCTGCAGAAAACTCTATACCATCATCTGATGCTCAAGGCATGGTTTCGCCTGTTCCTGCTGCGCTGCCTCCGCCAATGCAACCGGTAGTTCCAACCATGGTTCCACCATCTATTGTGCCCCCTATTGCTCCAATTCCTCCTCCCACTGGTGTCCGCCCACTGGCACCACTTCCTGTTCGTCCACCATCTATTAGGCCACCCATGTCACAAAATGGTGAGGTTGGATCAACTGACTCCGATTCAGAACATGATGACTCTGGCCCTGGAATAAACAAGGGTACAGGGGAGTATGAGATATCAGAAGAGAGTAGACTGGTAAGAGAGAGGCAGGAAAAGGCTATGCAGGAACTTATGATGAAGAGGCGTGCTGCTGCTCTGGCTGTTCCAACAAATGACATGGCTGTGCGAGCTCGACTTCGCCGTCTTGGTGAACCCATCACTCTTTTTGGTGAAAGGGAGATGGAGAGAAGAGACAGGTTGCGAATGATTATGGCAAAGTTGGATGCTGAAGGTCAGCTGGAAAAGCTGATGAAGGCTCATGAAGAAGAAGAGGCTGTGGCTTCTGCTGCAAAAGAAGAAGCCGAGGAAGACCTACAGTATCCCTTTTACACTGAAGGGTCAAAGGCCCTCCTGGATGCCAGAGTTGATATTGCTAAGTTTTCTTTAGTAAGAGCAGCAACACGTCTTCATCGTGCTCGGAGAAGAAGAAAGGATCCTGATGAAGATATAGATGCGGAAATAGATTGGGCACTGAAGCAGGCAGAGAACTTGGTTCTTGATTGTAGTGAGATTGGAGATGATCGGCCACTTTCTGGTTGCTCCTTCGCAGCGGATGGAAAATGCCTTGCTACCTGTTCTCTGACTGGAGGTGCGAAGCTTTGGAGCATGCCTAAAGTTAAAAAAATTTCCACCTTAAAGGGGCACACAGAGCGTGCTACTGATGTTGCTTACTCTCCTGTGCATAACCATTTAGCAACTGCCTCGGCTGACCGCACTGCAAGGTATTGGACTGATCAAGGGTCTCTTTTAAAGACATTTGAGGGTCATCTTGATCGGCTTGCTCGTATTTCCTTCCATCCATCTGGGAAGTACTTGGGCACTGCCAGCTTTGACAAGACATGGAGATTGTGGGACATAGAAACAGGAGAGGAGTTGCTTCTTCAAGAAGGTCACAGTAGGAGTGTATATGGCTTAGCTTTCCACCATGATGGATCATTAGCTGCATCTTGTGGACTGGATTCACTTGCTCGAGTTTGGGACCTTCGCACAGGGAGAAGTATTCTTGCACTGGAAGGTCATGTCAAGCCGGTTCTTGGCATCAGTTTTTCGCCTAACGGTTATCATTTAGCCACGGGTGGTGAAGACAACACCTGTCGCATTTGGGATTTGAGAAAGAAGAAATCCTTGTACGTCATTCCGGCTCACTCTAATTTAATATCACAAGTCAAATTTGAGCCGCAAGAGGGTTATTTTTTGGTAACAGCTTCGTATGATATGACAGCTAAGGTATGGTCAGCTCGTGACTTTAAGCCTGTCAAAACGTTATCTGGGCATGAGGCAAAAGTTACTTCTCTTGATATTCTTGGAGATGGACGGTATATTGCTACTGTCTCCCATGATCGCACCATAAAGCTGTGGTCCTGCAATATGGCTGGTGAACAAACTATGGATGTTGACTGA 1926 0.4772 MKIDKESSCWASSGIPNKPSSPCELRHLFPFLVTAHPSSSPPVFAAPFVELHRRHQLPLVLLRLVKVTRIMEVDEEQTTSTVSAENSIPSSDAQGMVSPVPAALPPPMQPVVPTMVPPSIVPPIAPIPPPTGVRPLAPLPVRPPSIRPPMSQNGEVGSTDSDSEHDDSGPGINKGTGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEEEEAVASAAKEEAEEDLQYPFYTEGSKALLDARVDIAKFSLVRAATRLHRARRRRKDPDEDIDAEIDWALKQAENLVLDCSEIGDDRPLSGCSFAADGKCLATCSLTGGAKLWSMPKVKKISTLKGHTERATDVAYSPVHNHLATASADRTARYWTDQGSLLKTFEGHLDRLARISFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLAFHHDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYVIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSLDILGDGRYIATVSHDRTIKLWSCNMAGEQTMDVD 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1173 641 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 387 418 - -
Acco06g1173 641 PANTHER WD40 REPEAT PROTEIN 165 630 - -
Acco06g1173 641 Pfam pre-mRNA processing factor 4 (PRP4) like 217 243 IPR014906 -
Acco06g1173 641 MobiDBLite consensus disorder prediction 135 187 - -
Acco06g1173 641 Pfam WD domain, G-beta repeat 510 544 IPR001680 GO:0005515
Acco06g1173 641 Pfam WD domain, G-beta repeat 422 460 IPR001680 GO:0005515
Acco06g1173 641 Pfam WD domain, G-beta repeat 592 629 IPR001680 GO:0005515
Acco06g1173 641 Pfam WD domain, G-beta repeat 383 418 IPR001680 GO:0005515
Acco06g1173 641 Pfam WD domain, G-beta repeat 471 502 IPR001680 GO:0005515
Acco06g1173 641 ProSitePatterns Trp-Asp (WD) repeats signature. 447 461 IPR019775 -
Acco06g1173 641 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 327 511 - -
Acco06g1173 641 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 512 546 - -
Acco06g1173 641 SUPERFAMILY PRP4-like 195 250 IPR036285 -
Acco06g1173 641 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 428 465 - -
Acco06g1173 641 Gene3D - 513 639 IPR015943 GO:0005515
Acco06g1173 641 Coils Coil 248 279 - -
Acco06g1173 641 SMART WD40_4 380 419 IPR001680 GO:0005515
Acco06g1173 641 SMART WD40_4 421 460 IPR001680 GO:0005515
Acco06g1173 641 SMART WD40_4 505 544 IPR001680 GO:0005515
Acco06g1173 641 SMART WD40_4 590 629 IPR001680 GO:0005515
Acco06g1173 641 SMART WD40_4 547 587 IPR001680 GO:0005515
Acco06g1173 641 SMART WD40_4 463 502 IPR001680 GO:0005515
Acco06g1173 641 SMART WD40_4 336 377 IPR001680 GO:0005515
Acco06g1173 641 SUPERFAMILY WD40 repeat-like 344 628 IPR036322 GO:0005515
Acco06g1173 641 ProSitePatterns Trp-Asp (WD) repeats signature. 489 503 IPR019775 -
Acco06g1173 641 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 555 631 - -
Acco06g1173 641 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 554 587 - -
Acco06g1173 641 PRINTS G protein beta WD-40 repeat signature 447 461 IPR020472 -
Acco06g1173 641 PRINTS G protein beta WD-40 repeat signature 531 545 IPR020472 -
Acco06g1173 641 PRINTS G protein beta WD-40 repeat signature 616 630 IPR020472 -
Acco06g1173 641 SMART pr04_2 212 265 IPR014906 -
Acco06g1173 641 ProSiteProfiles Trp-Asp (WD) repeats profile. 554 596 IPR001680 GO:0005515
Acco06g1173 641 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 597 629 - -
Acco06g1173 641 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 470 507 - -
Acco06g1173 641 CDD WD40 351 629 - -
Acco06g1173 641 ProSiteProfiles Trp-Asp (WD) repeats profile. 512 553 IPR001680 GO:0005515
Acco06g1173 641 ProSiteProfiles Trp-Asp (WD) repeats profile. 428 469 IPR001680 GO:0005515
Acco06g1173 641 ProSiteProfiles Trp-Asp (WD) repeats profile. 387 418 IPR001680 GO:0005515
Acco06g1173 641 ProSiteProfiles Trp-Asp (WD) repeats profile. 597 629 IPR001680 GO:0005515
Acco06g1173 641 ProSitePatterns Trp-Asp (WD) repeats signature. 531 545 IPR019775 -
Acco06g1173 641 Gene3D - 188 257 IPR036285 -
Acco06g1173 641 Gene3D - 329 512 IPR015943 GO:0005515
Acco06g1173 641 ProSiteProfiles Trp-Asp (WD) repeats profile. 470 511 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1173 432 628 U-box Gene Family AT2G33340 23.529 1.09e-11 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g1173 06 8069712 8073633 Acco06g1173 06 8069712 8073633 ECH