Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1125 ATGGCTCCAGCTTGTCCGAGAACCCGAGTCAAGTGGCAGAGAAAGAAGAAAGAAACAACGGCGAGGCATAGCGGTTCTAGTTTCAGTTCAACTTCAACCTCCCACGAAGATATAATAATGAACACTGTGGAGAAGCTGGATAATAACGAAGAAGATGCTTGTTCAAGTGGGTGTTCTACTCCGAAGGCTAAAAGGTTCAGAATACCAGAGCTCTTAACTTGTCCCCCAGCTCCCAAAAAGAGAAGGGTAACGTCTAATTGTTCTTCAAATAATATCCCTATAGCTTTTTTTGCTTCCCTGGATATAGAGTTATTCTTCTTCTCTGCCCTTAGAAATAATTGTTTGGACCACGTGGCTTGTGCTGGTGGGTTGTGGGCCCCGTATCACTTTCCTGCTTTTGCTGATTCCATACTGATAAGAATTATGGGATCCTATGGAATCCAAGCTATATTGAATAAATCAGATGGTCGGAAGAATATAATGAAGCCAAAATTGGAGCATTCAGAAGCAAATCTGATGAGCAGCAATTATAAGCTGTATACGGCCTGTATTTCTCAGGCTAAGTGCCATGGCCTGGGTAATGAAGCCTCCTCCAGTGACATGGTAACAATGGAAGGTCCCAATTATGTAGGAGTGACCTCAAGTCATGGACCTCAGCCTCTGGTGCATCCTCATGGTGTGGGACTTCGTACTGCTCAAATGGTGTTACCACTGGAAATAACAGAAGAGGAGCCTGTTTACGTTAATGCCAAGCAATACCATGGAATTTTGAGGCGCAGGCGATTACGTGCCAAGGCTGAGCTCGAAAAGAAGCTCATAAAAGGAAGGAAGCCTTACCTTCACGAGTCTCGACATTTGCATGCAATGAGAAGAGTCAGAGGATGTGGCGGCCGTTTCCTAAACACAAAGAAGCTTGCTAATAATGATACAACTTCTGCCAACACTACTACAACCAACAATAATGAGGATGCTGCTACTCATAAAACAATTTCTCCTGATTCAAACTCAACTTCTGATAATAACAAGCACTGCTCGTCACACGTTCAGGGATTTGATCTTGAAGGCGACTTTTCGGCTCACAAGCATTGGCGGACCTAG 1098 0.4408 MAPACPRTRVKWQRKKKETTARHSGSSFSSTSTSHEDIIMNTVEKLDNNEEDACSSGCSTPKAKRFRIPELLTCPPAPKKRRVTSNCSSNNIPIAFFASLDIELFFFSALRNNCLDHVACAGGLWAPYHFPAFADSILIRIMGSYGIQAILNKSDGRKNIMKPKLEHSEANLMSSNYKLYTACISQAKCHGLGNEASSSDMVTMEGPNYVGVTSSHGPQPLVHPHGVGLRTAQMVLPLEITEEEPVYVNAKQYHGILRRRRLRAKAELEKKLIKGRKPYLHESRHLHAMRRVRGCGGRFLNTKKLANNDTTSANTTTTNNNEDAATHKTISPDSNSTSDNNKHCSSHVQGFDLEGDFSAHKHWRT 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1125 365 PRINTS CCAAT-binding transcription factor subunit B signature 245 267 IPR001289 GO:0003700|GO:0006355
Acco06g1125 365 PRINTS CCAAT-binding transcription factor subunit B signature 276 299 IPR001289 GO:0003700|GO:0006355
Acco06g1125 365 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 183 352 IPR001289 GO:0003700|GO:0006355
Acco06g1125 365 ProSiteProfiles NF-YA/HAP2 family profile. 242 302 IPR001289 GO:0003700|GO:0006355
Acco06g1125 365 SMART cbf3 241 302 IPR001289 GO:0003700|GO:0006355
Acco06g1125 365 ProSitePatterns NF-YA/HAP2 subunit signature. 247 267 IPR018362 GO:0003677|GO:0016602
Acco06g1125 365 MobiDBLite consensus disorder prediction 1 34 - -
Acco06g1125 365 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 244 299 IPR001289 GO:0003700|GO:0006355
Acco06g1125 365 Gene3D - 242 303 - -
Acco06g1125 365 MobiDBLite consensus disorder prediction 307 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1125 Acco-ChrAcco06 7717277 7727197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1125 218 305 CCAAT-HAP2 Transcription Factor Family AT1G54160 64.773 1.39e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Acco06g1125 CBFB_NFYA 1.2e-25 No_clan