Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1123 ATGAATCACTTGACTGTGGAAATTGAAGATAGTTTTGCAAGCCTGCTTGACCTTGCAGCTAATAATGACGTTGAGCATTTCAAAAGATCAATTGAGCATGATCCTTCCTCTGTTGATGAGGTTGGACTGTGGTATGGTCGCCAAAAGGGGTCAAAGCAGATGGTCAACGAGCACCGGACACCTTTGATGGTTGCTGCTACGTATGGCAGCATTGATGTCATCAAGTTGATTCTTTCATTATCTTATGCAGATATTAATCGATCATGTGGGCTTGACAAAAGCACAGCTCTTCATTGTGCGGCATCAGGTGGGGCTGTAAATGCTGTTGATGTGGTGAAGCTGCTGTTGGCAGCTGGTGCTGATCCAAATTCTGTTGATGCCAATGGTCACTGTCCAGTTGATGTTATTGTGGTACCTCCCAAGCTTGAACATGTGAAAAGTATTCTTGAGGAACTTCTTCAAACAGATTGTTCAATGGCAGGGTGTGGTCTTAGGGTGATTACAGCTACAACAAATTCTAACTCTCCCCCTCCATCAACTTCTCCGGAGAATGGGTCCCTTTCTTCATTAGAGTTCCATTTGAAGCTAAAGTTAAAGGAAGCTAATGCTTTATCTGCATCAGAGAAGAAAGAATATCCTGTTGATCCATCTCTTCCTGACATCAAAAACAGCATCTACTCAACTGATGAGTTCCGAATGTATTCTTTCAAGGTTCGACCATGCTCACGCGCCTATTCACATGATTGGACTGAATGTCCTTTTGTCCACCCAGGGGAAAATGCTCGGAGAAGGGACCCAAGGAAGTTTCATTATAGCTGTGTCCCTTGTCCTGATTTTCGGAAAGGAGCTTGCCGTCGAGGAGATATGTGTGAATATGCTCATGGTGTTTTCGAGTGCTGGCTGCACCCAGCTCAATATCGGACCCGCCTCTGCAAGGATGGGACCAGTTGCTCGAGAAGAGTTTGCTTCTTTGCCCATACAGCTGAGGAACTTAGGCCGTTGTATGTTTCAACTGGTTCTGCTGTTCCATCACCACGCTCAAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAGTATGTTACCAGGCTCCCCTTCTTCAATGTCTGTCATGTCTCCTTCACCTTTCACTCCACCGATGTCACCGTCTGCCGCGGGCATGTCGCACTCTTCTGTTGCTTGGCCTCAACCTAATGTTCCAAACCTGCATCTGCCAGGAAGTAATATTTACTCCAGTCGTTTGAGATCTTCACTCAATGCTAGAGATATCCCTGTAGAAGACTATGATTTGTTGCATGACTATGATGTTCAGCAACACCAGCTGCTTAATGAGATGTCTTGCCTTTCCCAACAATCTATGAATTCTAATAACCTGAACCGCTCCGGTCGTATGAAGACCCCCCTGACCCCTTCAAATCTTGATGATCTCTTTTCTGCTGAGAGTTCTTCCCCTCGGTTTGCTGATCCAACATTGAATTCAGCTGTCTTTTCACCCACACACAAATCAGCTGTCCTTAATCAATTTCAGCAGCAGCAAAGCATGCTTTCACCCGTGAATACAAATTTTTCTTCCAAGAATGTTGACCATCCTTTGTTACAGGCCTCATTCCAAGCGTCAGGAAGGATGTCTCCTCGTAATATGGAACCCATCTCACCAATGAGTTCTAGGTTTTCTGTACTATCTCAACGTGAGAAGCAGCAACAGTTTCGTAGCCTTAGCTCACGGGATCTTGGCTCCAACTCTGCTGCTGCTGTTGCCACCGCCGCCGGTTTCAATGACAGTTCTTGGTCAGAATGGGGATCCAGCAATGGTAAATTGGATTGGGCTGTCAGTGCTGATGAATTGGGCAAGCACCGTAGATCATCGTCGTTTGAGTTTGGAAGCAACAGCGAGGAGCCAGATTTATCATGGGTGCAGTCACTTGTGAAAGAATCTCCAACTGAGATTAAGGAGAAATTGGGAACAGCCGTCTCAAGTGGTGATGTGAGCACTGGACAACAGCGAGACAAGCGTTTGAATCTTTAG 2028 0.4591 MNHLTVEIEDSFASLLDLAANNDVEHFKRSIEHDPSSVDEVGLWYGRQKGSKQMVNEHRTPLMVAATYGSIDVIKLILSLSYADINRSCGLDKSTALHCAASGGAVNAVDVVKLLLAAGADPNSVDANGHCPVDVIVVPPKLEHVKSILEELLQTDCSMAGCGLRVITATTNSNSPPPSTSPENGSLSSLEFHLKLKLKEANALSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSAAGMSHSSVAWPQPNVPNLHLPGSNIYSSRLRSSLNARDIPVEDYDLLHDYDVQQHQLLNEMSCLSQQSMNSNNLNRSGRMKTPLTPSNLDDLFSAESSSPRFADPTLNSAVFSPTHKSAVLNQFQQQQSMLSPVNTNFSSKNVDHPLLQASFQASGRMSPRNMEPISPMSSRFSVLSQREKQQQFRSLSSRDLGSNSAAAVATAAGFNDSSWSEWGSSNGKLDWAVSADELGKHRRSSSFEFGSNSEEPDLSWVQSLVKESPTEIKEKLGTAVSSGDVSTGQQRDKRLNL 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1123 675 Pfam Ankyrin repeats (3 copies) 50 126 IPR002110 GO:0005515
Acco06g1123 675 MobiDBLite consensus disorder prediction 650 675 - -
Acco06g1123 675 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Acco06g1123 675 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Acco06g1123 675 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Acco06g1123 675 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Acco06g1123 675 SMART ANK_2a 57 87 IPR002110 GO:0005515
Acco06g1123 675 SMART ANK_2a 92 124 IPR002110 GO:0005515
Acco06g1123 675 PANTHER UNKEMPT FAMILY MEMBER 17 646 IPR045234 -
Acco06g1123 675 MobiDBLite consensus disorder prediction 540 560 - -
Acco06g1123 675 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Acco06g1123 675 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Acco06g1123 675 Gene3D - 270 333 - -
Acco06g1123 675 SUPERFAMILY Ankyrin repeat 15 150 IPR036770 -
Acco06g1123 675 Gene3D - 7 159 IPR036770 -
Acco06g1123 675 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Acco06g1123 675 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Acco06g1123 675 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Acco06g1123 675 MobiDBLite consensus disorder prediction 658 675 - -
Acco06g1123 675 MobiDBLite consensus disorder prediction 621 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1123 Acco-ChrAcco06 7689303 7691330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1123 6 646 C2H2 Transcription Factor Family AT5G12850 56.968 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco06g1123 Ank_2 3.9e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g1123 06 7689303 7691330 Acco06g1123 06 7689303 7691330 ECH