Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1116 ATGGCTGATCCTTTCTCCAATTTCTTTTCTCCTCCTCCTTCTGGATTCTTCCAATTCAATCCCCTCCCTTACTATTATCCTCCTCCTCGTCCTAACCTTCCTCCACCAGTGTCCTCACACCAACATCATCATCGACATCCCTATCTCCATAACTTTATAGCTTCTTCTTCGCCTCCTACGTCACCTCCTCTCAGAGAAGCCCTCCCTCTTCTCAACCTCAACCCCACTCATGAGCCTCCTTGCACTACTTCCATGGAAGTGGAAGATCAATCTGCTCCGAAGCCTAAAGAAGAAGATGATGAAGAGGAGGATGACGAGGATGAGGACGACAACAGTGTGACTGTTGCGCTCCATATAGGCCTCCCTAGCCCTAGTGCTGCTGAGATGGCTTCTATCCTTTCTTCTTCTTCTTCCTCTCACCCAACACAAGAAGCAGCACCTGATGCTGATCTTGCGGACAATCCTTGCTCAGGACTCTCCAGGATCAACAAGGGCCAGTACTGGATCCCTACTCCTACCCAGATTCTCATTGGTCCTACCCAGTTTTCTTGCCCTGTTTGCTCGAAAACCTTCAACCGCTACAACAACATGCAGATGCATATGTGGGGGCATGGATCGCAGTACAGAAAAGGGCCAGAATCTCTGAGAGGTACACAACCAACGGGCATGTTGAGGCTTCCTTGTTATTGTTGTGCCCCAGGTTGCAGGAACAACATTGACCACCCAAGGGCTAAGCCCCTTAAGGACTTTAGAACCCTTCAGACTCACTACAAGAGGAAGCATGGCATTAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCTTTTGCTGTGAGAGGAGATTGGAGAACCCATGAGAAGAACTGTGGCAAGCTTTGGTATTGTATTTGTGGCTCTGATTTTAAGCACAAGAGATCTCTTAAAGATCATATCAAGGCTTTTGGGAGTGGCCATGCTGCTTATGGGATCGATGGCTTTGAAGAAGAAGATGAGCCAGCTTCCGAAGTAGAGCAAGATAATGATTCGACCCAGTGA 1032 0.4826 MADPFSNFFSPPPSGFFQFNPLPYYYPPPRPNLPPPVSSHQHHHRHPYLHNFIASSSPPTSPPLREALPLLNLNPTHEPPCTTSMEVEDQSAPKPKEEDDEEEDDEDEDDNSVTVALHIGLPSPSAAEMASILSSSSSSHPTQEAAPDADLADNPCSGLSRINKGQYWIPTPTQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDSTQ 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1116 343 Gene3D Classic Zinc Finger 244 319 - -
Acco06g1116 343 ProSitePatterns Zinc finger C2H2 type domain signature. 184 204 IPR013087 -
Acco06g1116 343 FunFam Zinc finger protein WIP2 235 317 - -
Acco06g1116 343 Gene3D Classic Zinc Finger 181 204 - -
Acco06g1116 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 266 286 IPR013087 -
Acco06g1116 343 FunFam zinc finger protein WIP2-like 181 204 - -
Acco06g1116 343 PANTHER ZINC FINGER PROTEIN WIP2 39 339 IPR043584 GO:0003700|GO:0010468
Acco06g1116 343 MobiDBLite consensus disorder prediction 95 111 - -
Acco06g1116 343 MobiDBLite consensus disorder prediction 126 156 - -
Acco06g1116 343 Pfam Zinc finger, C2H2 type 182 201 IPR013087 -
Acco06g1116 343 SMART c2h2final6 266 286 IPR013087 -
Acco06g1116 343 SMART c2h2final6 182 204 IPR013087 -
Acco06g1116 343 SUPERFAMILY beta-beta-alpha zinc fingers 248 286 IPR036236 -
Acco06g1116 343 MobiDBLite consensus disorder prediction 128 144 - -
Acco06g1116 343 SUPERFAMILY beta-beta-alpha zinc fingers 177 204 IPR036236 -
Acco06g1116 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 209 IPR013087 -
Acco06g1116 343 MobiDBLite consensus disorder prediction 51 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1116 Acco-ChrAcco06 7636365 7638574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1116 1 340 C2H2 Transcription Factor Family AT3G57670 61.954 1.58e-143 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco06g1116 zf-C2H2 0.0042 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1163 02 8511632 8513926 Acco06g1116 06 7636365 7638574 CCT
Acco06g1116 06 7636365 7638574 Acco06g1116 06 7636365 7638574 ECH