Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1114 ATGGAGACTGATAATGGTGAGACCAAGTCCAAGATGGAAGAATATGAAGTTATTGAGCAAATAGGCAGAGGAGCTTTTGGCTCCGCTTATCTTGTTCTTCATAACTCTGAGAATAAGAAGTATGTGCTGAAGAAGATTCGCTTGACCAAGCAAACCGAGAAATTCAAACGAACAGCGCACCAGGAGATGAACCTGATTGCAAAACTAAATAACCCATATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGGGGAGTATATATGCATTGTAACTGGCTATTGTGAAGGAGGTGACATGGCTGAGAACATAAAGAAAGCTCGGGGATCATTTTTTCCTGAGGAGAAGGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTGGACTACCTGCACTCTAATCGTGTACTCCATAGAGATCTTAAGTGTTCCAACATATTTCTCACCAAAGACAACGACATCCGTCTTGGTGACTTTGGTCTGGCAAAGCTGCTTAATTCAGAAGACCTCACTTCCTCGGTTGTTGGAACTCCAAACTATATGTGTCCTGAGCTACTTGCAGATATACCCTATGGTTATAAATCTGATATATGGTCACTTGGTTGCTGCATGTTTGAAATTGCTGCACATCAACCAGCTTTTCGTGCTCCTGATATGGCGGGGCTTATCAATAAAATAAATAGATCCTCCATTTCTCCATTGCCTATTGTTTATTCTTCCACATTGAAACAACTCATAAAGAGCATGCTCAGGAAAAACCCTGAACATAGACCAACAGCAGCTGAAGTGTTAAGGCATCCTCTTTTACAACCATATGTTCTCCGATGTCGGAATGCATCATCTAATGTTCTTCCAGTGTATCCCATAGTCAACTCAAAGGATAAAACAAAGAGGTCTTATAAATCTGGTGCCAGAAAAGAACGCAAGGACAAAGAAGTGGGATTAGAAAATCTTTTGGTTAGAGTTCACCCATTTGAGGGAAATGAAGATCTGCCTAACAATGACAAGCGATGGGTCTCAAGCATTGAAGAAGACATCCTTCAGACCAATCTGGCTGATCCTACCAGCTTCATAACTGAATCATCTACTAGTATCAGTGGCTCGAAGGATGGATCAACAACATCTGAATCAACCATTTGCAGCATGTGCAAGGGAGCAGACTATAAAAGTATACTTACAAGGGAGACAACTGCCAATGAAGTTACATCAAAGAGTATGCCAGGTCCTAAGCATGAAGGACAACTATTTGCTGCTGAACAACTTCAAAAATCAGAAGGGGTTGACACAGTTGCTGTGACCACCGAAGTTGAAGATGCTTTACCTAATGGAGATTTCGATAAAGCTGAAGCGCAGAGAGATGTCAATCTTGATGACTTCAGGAAATCAACAGCATCAAGCGAAGAAAGCACTGATAAGGGTGGGTCTCTAGATGAGGAAATGTCACCACCGGGGTTGCCACCTACTAGTGAGGTTGAAGATAATTCTGAATCGGGAGGAGTCTACTTACAGAAAAGGGAAGGCTCACATACGTGCGTGTCTTCTGAGAGTAGTGATACACTTGCAGGTAAGGATGAAGGGAGAGAAAAGCCACACACGCATAAAGAAAATGATAGTGCATGCATGATTGATCAGACACCAAGTGACAATTCTTTAAGTACACTTGATGCAATAGGGGTTAATGAAGCCAAGATTGAGTTGGATAGTTCCTGCGAGGAAAGAGCTCATGCTCTAGAGACTCTACTTGAATTATGTGCTGAGCTACTCAAGCAAGACAAACTTGAAGAACTTGCGGGTGTGCTGAGACCATTTGGGCCGGAAGCTGTCTCTTCCAGAGAGACTGCAATATGGTTGACGAAGAGCCTAATGTCTGCACAAAAATTCAATACTGAAACCTAG 1896 0.4246 METDNGETKSKMEEYEVIEQIGRGAFGSAYLVLHNSENKKYVLKKIRLTKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKGEYICIVTGYCEGGDMAENIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVLHRDLKCSNIFLTKDNDIRLGDFGLAKLLNSEDLTSSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAEVLRHPLLQPYVLRCRNASSNVLPVYPIVNSKDKTKRSYKSGARKERKDKEVGLENLLVRVHPFEGNEDLPNNDKRWVSSIEEDILQTNLADPTSFITESSTSISGSKDGSTTSESTICSMCKGADYKSILTRETTANEVTSKSMPGPKHEGQLFAAEQLQKSEGVDTVAVTTEVEDALPNGDFDKAEAQRDVNLDDFRKSTASSEESTDKGGSLDEEMSPPGLPPTSEVEDNSESGGVYLQKREGSHTCVSSESSDTLAGKDEGREKPHTHKENDSACMIDQTPSDNSLSTLDAIGVNEAKIELDSSCEERAHALETLLELCAELLKQDKLEELAGVLRPFGPEAVSSRETAIWLTKSLMSAQKFNTET 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1114 631 Gene3D Transferase(Phosphotransferase) domain 1 97 325 - -
Acco06g1114 631 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 12 531 - -
Acco06g1114 631 FunFam Serine/threonine-protein kinase Nek6 1 94 - -
Acco06g1114 631 FunFam serine/threonine-protein kinase Nek6 isoform X2 95 283 - -
Acco06g1114 631 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g1114 631 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g1114 631 MobiDBLite consensus disorder prediction 441 475 - -
Acco06g1114 631 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Acco06g1114 631 SUPERFAMILY Protein kinase-like (PK-like) 12 300 IPR011009 -
Acco06g1114 631 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g1114 631 CDD STKc_Nek 15 269 - -
Acco06g1114 631 Gene3D Phosphorylase Kinase; domain 1 1 94 - -
Acco06g1114 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Acco06g1114 631 MobiDBLite consensus disorder prediction 441 541 - -
Acco06g1114 631 MobiDBLite consensus disorder prediction 520 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1114 Acco-ChrAcco06 7609180 7613749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1114 7 270 MAP Kinase Kinase Kinase AT3G13530 32.707 5.81e-37 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Acco06g1114 Pkinase 3.9e-68 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1166 02 8538601 8543566 Acco06g1114 06 7609180 7613749 CCT
Acco06g1114 06 7609180 7613749 Acco06g1114 06 7609180 7613749 ECH