Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1109 ATGGAGCAAACTACAGGAGGCCTGCCCGGATCCAGTCTTGCTATTCGTGAGCACGATAAGTCCGCCCTTGAATCCATCCAATTTGACCAAGAGATTCAGGGAATCATGGCTCCGCCCCCGGAAAACGCGAGCTCCTTCACTGCACTTCTTGAACTCCCACCACCGCAAGCCGTGGAGCTGCTTCACTCGCCGGACTGTGGCGGAGCGGCCGCTGCAAGCAGCGCATCTGCGAAATCCCTATGCCAAATCAACAATCAGAAGCCCTATCTATTCCACTCTTTCAGTGGCAATTTAACTTTTCCTGCTAACGCTGCTTTGATTGAGCGAGCTGCCAAGTTCTCTGTGTTTGCCGGGGAAAACTCGAACTCAGAGGATTCCAGTGTGGTTGGACGTAATTCGGGTGTCAATTTGGATAATGTAAAGAAAGAGCCACCGGAAAACGATTCCAATCCTAGTCCAATGCAAGGCTGTGTTTCTGATCCCACCGTTGAGAACTCGAACCAGAGGGCTGCAAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGGCTGCTCAAAGAAGAGTAAAGGTGCCGCCGATGAAGCCTCCGGGGAAGCTGAAAAGCTTCCTTACGTTCATGTTCGAGCTCGACGAGGCCAAGCCACAGACAGCCACAGCTTAGCAGAAAGGGCCAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTACAAGAGCTGGTCCCCGGCTGCAACAAGATATCAGGAACTGCATTGGTTCTGGATGAAATCATCAACCACGTGCAATCTCTACAGCGGCAAGTGGAGTTCTTATCAATGAAATTGGCTGTGGTTAATCCAAGAATTGACTTCAACCTTGACAGCATATTGGCTACAGAAGGTGCATCTCTCATGGAATGCAACTTCCCCAGCACGGTTGCTCCTTTGATGTGGCCAGAAATCCCAGTCAATGGAAACAGACAGCAATACCAACAACAGTGGCAAGATGATGCAATCCACCAACCAGCTTGGGGGAGAGAAGGAAACCTTAATTTTATCACTCCAAATAACTCTTTTTTGAGCTATGACTCGTCAGCAAATTCAGCAACTCTGCACTCAAATCAGTTGAAGATGGAACTCTGA 1116 0.491 MEQTTGGLPGSSLAIREHDKSALESIQFDQEIQGIMAPPPENASSFTALLELPPPQAVELLHSPDCGGAAAASSASAKSLCQINNQKPYLFHSFSGNLTFPANAALIERAAKFSVFAGENSNSEDSSVVGRNSGVNLDNVKKEPPENDSNPSPMQGCVSDPTVENSNQRAAKRKEREKKVKGCSKKSKGAADEASGEAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLAVVNPRIDFNLDSILATEGASLMECNFPSTVAPLMWPEIPVNGNRQQYQQQWQDDAIHQPAWGREGNLNFITPNNSFLSYDSSANSATLHSNQLKMEL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1109 371 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 103 336 IPR024097 GO:0006355
Acco06g1109 371 Pfam Helix-loop-helix DNA-binding domain 216 263 IPR011598 GO:0046983
Acco06g1109 371 CDD bHLH_AtBPE_like 202 287 - -
Acco06g1109 371 Gene3D - 209 281 IPR036638 GO:0046983
Acco06g1109 371 MobiDBLite consensus disorder prediction 119 134 - -
Acco06g1109 371 SMART finulus 218 268 IPR011598 GO:0046983
Acco06g1109 371 FunFam transcription factor bHLH48-like isoform X1 209 281 - -
Acco06g1109 371 Coils Coil 252 272 - -
Acco06g1109 371 MobiDBLite consensus disorder prediction 146 166 - -
Acco06g1109 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 281 IPR036638 GO:0046983
Acco06g1109 371 MobiDBLite consensus disorder prediction 182 197 - -
Acco06g1109 371 MobiDBLite consensus disorder prediction 119 197 - -
Acco06g1109 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 262 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1109 Acco-ChrAcco06 7562401 7566720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1109 22 371 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 53.887 5.10e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco06g1109 HLH 1.4e-05 No_clan