Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1106 ATGGATTTGAATTCGCATCAGAATTTTCAGCCCCAAGAGCATCAACCCAACTCCGGGTTAGCTCGGTTTCGTTCTGCGCCCAGCTCGCTGTTCGCTGATTTCAGACAAGCTGTTGAATCTGCTAAATCCGAGAGACGAACTTCGAGATTCGCAAGCTGTAGTAATAGCAACAATACGGCGTTGCCGAGCTTTCAAGAATTCGAATCCGAACACAAACCCCCTAAATCTCCACCGGAGGCGGCTCTGAACCGTATGAATTCCCAGCAAGACTACAGTGGCGGCGGACTACCACCTCACTACCCCAGGCATAGTTCTTTCATGGATAGCTCCTTTGGACCGATGGGTTCAATGGGACTGGATCAAGAAACTCAGCAAAAAAGATTTGCTTCGCGTTTTCATAGGCAAAGTAGCTCACCTGCCGGTCTTTTCTCCAACATCTCATTTCCTAATGGGCATGGCACCATTAGAGGGGTAAGAAACTATGGTGGGGTGGACAGAAGTAGTAATGATGGACCTGCTCCATCTATCAGCCGATTGAAGAATCAGACTAGCTTCTCATCAAGAAGTACCTCTCTGGGAGCGCTGTCCCAGATCTCTGAAATAGAGTTTGAGGGTATTGGAGCAACTAGCCCTGATGATGGTAGGGTAGGAACTAGTAACAGTGGTAACACTCGGTATTGTGGCCCTGGCTTCCCTTTTGCTTCCTGGAATGATACAAATCTTACTGGTTTTAGAAGGGACCAAACTAGTAATGAAAAGTTGTATTCTGATGTTCAGATTATTGAGCCTGGAAGTCGGGTTAATGTATTATCGCACCACTTGAGTCTGCCAAAAACCCCATCACATATGGCTGCTGTGGACAAGTTTCTTCAATTCCCAGATTCTGTTCCCTGTAAAATAAGAGCAAAGCGGGGCTGTGCCACTCATCCTCGAAGTGTAGCCGAAAGGGTTAGAAGAACTCGCATCAGTGAACGCATGAAAAAGTTACAAGATCTTGTCCCAAACATGGACAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTGTCATGTACATTAAAGATCTTCAGAAACAATTCAAGACTCTGAGTGAGAAACGGGCAAACTGCAAATGTGCACGCACCCAGAAAGCAGATGCAGATTAA 1146 0.4625 MDLNSHQNFQPQEHQPNSGLARFRSAPSSLFADFRQAVESAKSERRTSRFASCSNSNNTALPSFQEFESEHKPPKSPPEAALNRMNSQQDYSGGGLPPHYPRHSSFMDSSFGPMGSMGLDQETQQKRFASRFHRQSSSPAGLFSNISFPNGHGTIRGVRNYGGVDRSSNDGPAPSISRLKNQTSFSSRSTSLGALSQISEIEFEGIGATSPDDGRVGTSNSGNTRYCGPGFPFASWNDTNLTGFRRDQTSNEKLYSDVQIIEPGSRVNVLSHHLSLPKTPSHMAAVDKFLQFPDSVPCKIRAKRGCATHPRSVAERVRRTRISERMKKLQDLVPNMDKQTNTADMLDLAVMYIKDLQKQFKTLSEKRANCKCARTQKADAD 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1106 381 Gene3D - 307 379 IPR036638 GO:0046983
Acco06g1106 381 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 26 371 - -
Acco06g1106 381 MobiDBLite consensus disorder prediction 170 191 - -
Acco06g1106 381 Pfam Helix-loop-helix DNA-binding domain 312 357 IPR011598 GO:0046983
Acco06g1106 381 MobiDBLite consensus disorder prediction 37 110 - -
Acco06g1106 381 SMART finulus 312 362 IPR011598 GO:0046983
Acco06g1106 381 MobiDBLite consensus disorder prediction 1 24 - -
Acco06g1106 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 306 356 IPR011598 GO:0046983
Acco06g1106 381 Coils Coil 353 373 - -
Acco06g1106 381 MobiDBLite consensus disorder prediction 157 191 - -
Acco06g1106 381 MobiDBLite consensus disorder prediction 47 65 - -
Acco06g1106 381 FunFam Transcription factor bHLH130 family 307 376 - -
Acco06g1106 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 371 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1106 Acco-ChrAcco06 7539533 7541519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1106 1 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 43.939 7.25e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco06g1106 HLH 1.9e-09 No_clan