Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1077 ATGGCGTCTAAAGGTCCGAGGTCTAGGATTGACCACGAGAGTAGAGCAAAGCGGCAAAAGGCACTTGAGGCTCCAAGGGAGCCTCGACGTCCTAAAACTCACTGGGATCATGTCATAGAAGAGATGGTGTGGTTATCAAAGGATTTTGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAGGAAAGTTGCTTTAAGAGCTAGCAAGGGCATGTTAGATCCGGCTACAAGAGGTGAAAGGAAGATGAAGGAAGAAGAGCAGCGATTAAGGAAAGTTGCACTAAATATTTCGAAGGATGTTAAGAAATTTTGGATAAAAATAGAAAAGCTGGTTCTTTACAAGCATCAGATGGAGCTTGATGAGAAAAAGAAAAAGGAACTTGACAAACAGCTTGAGTTTCTTTTGGGTCAAACTGAAAGGTACTCAACCATGTTGGCTGAAAATCTTGTGGATGCTATTAAACCAGTTGAGAAATGGTCACCAGAACATCATAGGAGTGCCCAATACAAAGGAGAAGATGAAGACGTTATCAACAGATCTAACGAAGCTAATGCTGAGTTTCAGTCCGATCCTAATGACAATGATGAAGAATACGATGTGCAATCTGATGATGAATCGGAGGATGATGAGCAAACCCTTGAGGAAGATGAGGCTCTCATAACTGAAGAAGAAAGGCTAGAGGAGTTGGCGGCTTTGCATGACGAAATTGATCTTCCTCTTGAGGAGTTACTGAAGCGTTATTCTGGGGAGAAAGGACCAGCTAGTCATGAAAGTAGTCCAGAGCACAGCAATGATGATGATACAGAAGTCAGAGCTGGTAATGGAAATGAAAATGGAGACAGTATTTTATCTAATAGCAAGCTTGGCTCAAGCAGCTCCAGCATGATATCTGGTCGTCGTTGTGATGAAAGTAATGGTGGTCTAACTACACCAGCAGAGAACCTAGCCAAAGATAAGACCTATCAATCTGAAAATCTTACATATGACTTTAGTGATGAAGAGGAAGATGGTGACTTCCTGCTTGCCACAGAAGATAATGATGATGAAACAACCTTATCAGAGGAGGAAAAATTGGAAAAAATGGACGCAATTGCTCCAAAGGACGAGATTGCTTTATTACAAAGGGAGAGTGACATGCCTGTTGAGGAACTCCTTGCAATGTATAGAAAGTATTCCAGTGGCAAACATAGGGAAGATGAATCTGAAGATGCTGCTTCTTTGTCGGAAGATCTTTGGGATTCTCCACCGCATGAAGATGGTAGGAAGAAGGATCCTGCGGTTTCTTTGGATGAAGATGTCAAGCCTGTTGAGCACATGGCTATTGTACAGTCCCAAACTGAAGAACAACATTGGGAAGGGCCTCATGAAAATCCTGAGGGAAGGGATAGTGAAAATCTGATAGCAGATGCTGCAGCTGCTGCAAGATCAGCGCAACCAACTGGAAATACCTTCTCCACAACTAAAGTGCGCACAAAGTTCCCTTTTCTCCTCAAGTATCCTCTCCGTGAGTATCAACACATTGGATTAGATTGGCTTGTCACAATGTATGAGAAAAGGCTGAATGGGATTTTGGCAGATGAAATGGGACTTGGTAAAACAATTATGACTATAGCTTTGCTTGCACATCTTGCTTGTGAAAGAGGGATTTGGGGTCCACATCTTATTGTGGTACCAACTAGTGTCATGCTTAACTGGGAGACTGAATTTCTCAAATGGTGTCCTGCTTTTAAAATTTTGACTTATTTTGGAAGTGCAAAAGAGAGGAAGCTCAAAAGACAAGGATGGTTGAAACCAAACTCATTTCATGTATGCATAACAACTTATCGATTAATTATTCAGGATTCTAAAGTCTTTAAGCGAAAGAAGTGGAAATACTTGATCTTAGATGAAGCTCACCTCATTAAAAATTGGAAGTCACAAAGATGGCAAACCCTCTTGAATTTCAATTCAAAGCGACGTATTCTCTTGACTGGTACACCACTACAGAATGATCTTATGGAACTTTGGTCTCTCATGCACTTCTTGATGCCTCATGTTTTCCAGTCTCATCAGGAGTTTAAGGATTGGTTCAGTAATCCTATATCTGGGATGGTGGAGGGAGAGGAAAAAGTGAATAAGGAGGTTGTTGATCGCTTGCACAATGTCCTTCGTCCCTTCATACTCCGTCGCTTAAAACAAGATGTGGAGAAACAGCTTCCAATGAAGCATGAGCATGTCATATATTGTAGATTGTCAAAAAGGCAGCGGAATTTGTATGAAGACTTCATTGCTAGTATTGAGACCCAAGCCACTCTTGCGAGTGCCAATTTTTTTGGGATGATTAGTATCATAATGCAACTCCGTAAGGTTTGCAATCACCCTGACCTATTTGAAGGCCGTCCTATAATCAGTTCTTTTGATATGTGGGGCATTGATGTTCAGCTAAGTTCTTCTGTGTGTTCATTGTTCTCAACCAACCCCTTTTCGTCAGTAGACCTACGAGGTTTTGGATTTTTATTTACTCATCTTGATTATAGCATGACTTCATGGGAGAGTGATGAAGTAAAAGCTATCGAGACCCCTGCAAGTTTAATCATGGAGCGTGCTGATATGAATGGCCTACAAGTAATTAGGCCTAAATCAACGGATCAGAAGAGTTTTCAAGGAACTAACATTTTTGAGGAAATTCAGAGGGCAATTTGGGAAGAGAGGCTGAGAGAAGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAATTCTTTGAGGTGTAAAAAAAGGCCTGTCTATTCAACAACCCTACGGGATCTTGTTACCATTAGGCATCCTGTGTATGACATTCATCAGGTGAAGGCTAATCCTAGGTCATACGTGTATTCCTCACTGCTAGCTGACATTGTCCTCTCACCAATTGAACGTTTCCAAAATATGGTTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCAGCAGCACGAGCTCCACCTCCTGTCTGCTGGTGCAGTAGAAGTGAAACGCCAGTGTTTCTTCATCCATCGTACAAGCAAAAATGCTCTGAAGTTTTGTCACCCCTTCTGCCGCCAATCAGGCCAGCAATTGTTCGACGGCAGGTGTATTTCCCAGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAGGAACTTGCGAGATTGTTGAGGAAATTAAAATCAGAAGGCCACAGAGCATTGATATTCACACAGATGACAAAGATGCTTGACGTACTGGAGGCTTTCATTAATTTGTATGGTTACACTTACATGAGATTAGATGGATCAACACAACCAGAAGAGAGGCAAACCTTGATGCAACGTTTTAACACAAACCCCAAAATTTTTCTTTTCATCTTGTCGACCCGTAGTGGGGGTGTTGGTATTAATCTAGTTGGAGCTGACACAGTTATTTTTTACGATAGTGACTGGAATCCTGCTATGGATCAACAAGCTCAAGATCGGTGTCATAGGATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATAAGTGAAAGCACCATTGAAGAGAATATACTGAAGAAAGCAAAACAGAAGCGTGCTCTTGATGATTTAGTTATACAGAGTGGGAGTTATAATACTGAATTTTTCAAGAAGCTTGATCCTATGGAATTATTTTCAGGTCATAGAACACTTCCAGTGAAAAACATGCAGAAGGAGAAAAGCCAGGACATTGGGGATGAAGTTTCTGTAAGTAATGCAGATGTGGAGGCAGCATTGAAATACGCTGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTTGAACTTGAAGAAGCCGTGGAAAACCAGGAGTTCACAGAAGAAGCCATAGGGAGACTTGATGAGGATGAGTATGTAAATGAAGATGATACAAAGGTTGATGACCCTTCAGAATTGGCTGAATCAGTTTCTAAGTCAAGTAAAGAGAATGCATTAATGTTTGTTGGAAGTGATCCTAAGGAAGAAAGACCTCTCTCTGTCTCTATCAAAGAAGATGATGTTGACATGTTGGCTGATGTCAAACAGATGGCGGCGGCGGCGGCGGCAGGTGGACAAGCTATCTCAGCCTTTGAGAACCAGCTACGCCCAATTGATCGGTATGCCATTCGTTTTCTGGAGGTGTGGGATCCAATTATAGATAAAGCATCCTTGGAATCTGAAGTCAGGTTTGAGGATACAGAATGGGAATTAGATCGCATTGAGAAGTACAAGGAGGAGATGGAAGCTGAAATTGATGAAGATGAAGAACCTCTTGTATATGAAAGATGGGATGCCGATTTTGCAACTGAGGCATATCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTTGAGAATGAGGCTAGGCAGAAAGAAGAGGCTGATGAAGAAAATTGTGATCCTGGAAAAATTCAAACACCAAGGGATTCTAAGCCCAGACCTAAAAAGAAGCCCAAGAAAACCAAGTTTAAATCCCTGAAGAAAGGATCTTTGGCCTCTGAATCCAAACTTATGAAAGAAGAACCACAAACAGATCCAATGTCAATAGATGATGAGATTGTCACTAGCCTGGACCTGGGGTCTCCAAATTCAACTAAGCAGAAAAAGCGTAAAAAGCCTAAATTTATAGCTGATGGGGAGGAGGAGAAGACACTAAAGAAGTCCAAGAAGAGCAAGAGGGCTGCTGATATTTGTGCTTCTGATTCAGATAATGCCTTGTTAGGTTTGCCAGATGAACATGCAGAACCAAAGCAATGTGAAAGTATGGTTGAATCTGAACTGAAACCTCCCAGCAGGAGTAAAATGGGAGGGAAAATATCCATAACACCAATGCCAGTCAAACGAATTCTGACAATAAAACCAGAAAAAGTGAAGAAGGGTAATGCTTCGTCCAAAGATGGGGTTCCATCAGCTGATTTTTGGCAGTCACGGGAAGATGCAATTTTATGTGCTATTGTTCATGAATATGGTTCTAACTGGAGTTTGGTGAGCGAAACACTCTACAGTATGACTGCTGGAGGATCATACAGGGGTAGATACCGTCATCCTGTCCATTGCTGTGAGAGATTCAGAGAACTAGTTCAAAGATATGTTTTGTCAACGACAGACAATGCTAATCATGAGAGGGGCAACAGTACTGCCTCGGGAAAGTCTCTCCTGAAAGTTACTGAGGATAACATTCGGATGTTGTTAGATGTTGCTTCTGAGCAGGAAAATAGAGAGTTATTACTACAGCAGCATTTTTTTGCTCTGCTTTCTTCTGTCTGGAAGTCAGCATCACGTTTTGATCAGAGGAAAAATCCACCAACTCAAAATGGCCACTATTATGATTATAGTTTCTTTACTTCCATGGGCCATAATTCTCAGAGCCTTCTGAAGAAGCCTTCTGAAAGGATGACGGTCACTAATCTGGCCCAGAGCAGAAAGTTATTAGCCGCTGCACTTGAAGACACCAGTAGTAGGCAACAGGATGATAAAATCTCTCCCTCAAATCAGGGTGACAACGTGCCAGTGGCTACTGATCAGCTGGATGTGACACTGGAATTCCCAAAAGACAAGAGTGACACATTGATCTCATTTCCTTCTGTTATAAATTTATCCATACAAGGGACAGAGCCCCTACAATCGGTAATTTACCCAAATGGGGAAGATCATCATCTTAGAGCTTGTGGATCTGTTGCTGAGGATCGTTTCAGGGAGGCAGCCAGAGCTTGCGAGGAAGATAGTTATGGATGGGCTTCCTCAGTATTCCCAACAAATGATTCAAAGTCCAGACCAGGATCTAAGATACAGGCTTCAGGAAAGCACAAGTCCTCCATCTCAGACTCCATTAAGCCTGCTAAATCGAAGTCCAAACGAAATTCAATGGATACTAGTGAGGCACGTCACCAACAGGTTGAGCCATTATTCCAGTCAATGCCATCACTTCCAGCAAAGGATCTGAGGATTGATCTTAATTCAATCGCAACGGACGAAGCGGTGATTGATGATAATATGGATTGCAGCCTGCCGTTTGTCCTAAATGAGGAAAATTCGTTGGAAACAGAAACTTTAGTTATGGTCCCACATGATTTCGTTGCTGGCTTAATCTCAGGCCTTGATGATTATTCAGAATTATCGGAATATACAGACATTGGATAA 6123 0.4191 MASKGPRSRIDHESRAKRQKALEAPREPRRPKTHWDHVIEEMVWLSKDFESERKWKLAQARKVALRASKGMLDPATRGERKMKEEEQRLRKVALNISKDVKKFWIKIEKLVLYKHQMELDEKKKKELDKQLEFLLGQTERYSTMLAENLVDAIKPVEKWSPEHHRSAQYKGEDEDVINRSNEANAEFQSDPNDNDEEYDVQSDDESEDDEQTLEEDEALITEEERLEELAALHDEIDLPLEELLKRYSGEKGPASHESSPEHSNDDDTEVRAGNGNENGDSILSNSKLGSSSSSMISGRRCDESNGGLTTPAENLAKDKTYQSENLTYDFSDEEEDGDFLLATEDNDDETTLSEEEKLEKMDAIAPKDEIALLQRESDMPVEELLAMYRKYSSGKHREDESEDAASLSEDLWDSPPHEDGRKKDPAVSLDEDVKPVEHMAIVQSQTEEQHWEGPHENPEGRDSENLIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACERGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFILRRLKQDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASIETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIISSFDMWGIDVQLSSSVCSLFSTNPFSSVDLRGFGFLFTHLDYSMTSWESDEVKAIETPASLIMERADMNGLQVIRPKSTDQKSFQGTNIFEEIQRAIWEERLREAKERAAAIAWWNSLRCKKRPVYSTTLRDLVTIRHPVYDIHQVKANPRSYVYSSLLADIVLSPIERFQNMVDVVESFMFAIPAARAPPPVCWCSRSETPVFLHPSYKQKCSEVLSPLLPPIRPAIVRRQVYFPDRRLIQFDCGKLQELARLLRKLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGSYNTEFFKKLDPMELFSGHRTLPVKNMQKEKSQDIGDEVSVSNADVEAALKYAEDEADYMALKKVELEEAVENQEFTEEAIGRLDEDEYVNEDDTKVDDPSELAESVSKSSKENALMFVGSDPKEERPLSVSIKEDDVDMLADVKQMAAAAAAGGQAISAFENQLRPIDRYAIRFLEVWDPIIDKASLESEVRFEDTEWELDRIEKYKEEMEAEIDEDEEPLVYERWDADFATEAYRQQVEALAQHQLMEELENEARQKEEADEENCDPGKIQTPRDSKPRPKKKPKKTKFKSLKKGSLASESKLMKEEPQTDPMSIDDEIVTSLDLGSPNSTKQKKRKKPKFIADGEEEKTLKKSKKSKRAADICASDSDNALLGLPDEHAEPKQCESMVESELKPPSRSKMGGKISITPMPVKRILTIKPEKVKKGNASSKDGVPSADFWQSREDAILCAIVHEYGSNWSLVSETLYSMTAGGSYRGRYRHPVHCCERFRELVQRYVLSTTDNANHERGNSTASGKSLLKVTEDNIRMLLDVASEQENRELLLQQHFFALLSSVWKSASRFDQRKNPPTQNGHYYDYSFFTSMGHNSQSLLKKPSERMTVTNLAQSRKLLAAALEDTSSRQQDDKISPSNQGDNVPVATDQLDVTLEFPKDKSDTLISFPSVINLSIQGTEPLQSVIYPNGEDHHLRACGSVAEDRFREAARACEEDSYGWASSVFPTNDSKSRPGSKIQASGKHKSSISDSIKPAKSKSKRNSMDTSEARHQQVEPLFQSMPSLPAKDLRIDLNSIATDEAVIDDNMDCSLPFVLNEENSLETETLVMVPHDFVAGLISGLDDYSELSEYTDIG 2040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1077 2040 PANTHER HELICASE SRCAP-RELATED 15 1942 - -
Acco06g1077 2040 Coils Coil 117 137 - -
Acco06g1077 2040 MobiDBLite consensus disorder prediction 1534 1558 - -
Acco06g1077 2040 MobiDBLite consensus disorder prediction 1473 1487 - -
Acco06g1077 2040 MobiDBLite consensus disorder prediction 1909 1934 - -
Acco06g1077 2040 MobiDBLite consensus disorder prediction 161 180 - -
Acco06g1077 2040 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Acco06g1077 2040 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 747 812 - -
Acco06g1077 2040 SMART helicmild6 1072 1155 IPR001650 -
Acco06g1077 2040 MobiDBLite consensus disorder prediction 1446 1558 - -
Acco06g1077 2040 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 725 1229 IPR027417 -
Acco06g1077 2040 MobiDBLite consensus disorder prediction 1576 1600 - -
Acco06g1077 2040 Pfam Helicase conserved C-terminal domain 1043 1155 IPR001650 -
Acco06g1077 2040 MobiDBLite consensus disorder prediction 412 435 - -
Acco06g1077 2040 Pfam SNF2-related domain 518 790 IPR000330 GO:0005524|GO:0140658
Acco06g1077 2040 Coils Coil 1435 1458 - -
Acco06g1077 2040 MobiDBLite consensus disorder prediction 1 33 - -
Acco06g1077 2040 MobiDBLite consensus disorder prediction 189 223 - -
Acco06g1077 2040 MobiDBLite consensus disorder prediction 247 273 - -
Acco06g1077 2040 MobiDBLite consensus disorder prediction 247 337 - -
Acco06g1077 2040 ProSiteProfiles Myb-like domain profile. 1635 1688 IPR001005 -
Acco06g1077 2040 MobiDBLite consensus disorder prediction 1488 1507 - -
Acco06g1077 2040 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 513 678 IPR014001 -
Acco06g1077 2040 FunFam Photoperiod-independent early flowering 1 471 746 - -
Acco06g1077 2040 MobiDBLite consensus disorder prediction 1810 1831 - -
Acco06g1077 2040 MobiDBLite consensus disorder prediction 274 327 - -
Acco06g1077 2040 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 1008 1262 - -
Acco06g1077 2040 Pfam HSA domain 27 93 IPR014012 -
Acco06g1077 2040 Gene3D - 1015 1261 IPR027417 -
Acco06g1077 2040 Coils Coil 1260 1280 - -
Acco06g1077 2040 SMART ultradead3 497 690 IPR014001 -
Acco06g1077 2040 Gene3D - 747 799 - -
Acco06g1077 2040 MobiDBLite consensus disorder prediction 1935 1954 - -
Acco06g1077 2040 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1046 1196 IPR001650 -
Acco06g1077 2040 CDD SF2_C_SNF 1031 1166 - -
Acco06g1077 2040 CDD DEXQc_SRCAP 501 723 - -
Acco06g1077 2040 Gene3D - 1631 1692 - -
Acco06g1077 2040 MobiDBLite consensus disorder prediction 1446 1472 - -
Acco06g1077 2040 MobiDBLite consensus disorder prediction 1909 1957 - -
Acco06g1077 2040 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 723 IPR027417 -
Acco06g1077 2040 MobiDBLite consensus disorder prediction 392 435 - -
Acco06g1077 2040 SMART bromneu2 23 94 IPR014012 -
Acco06g1077 2040 Gene3D - 470 746 IPR038718 -
Acco06g1077 2040 Coils Coil 1387 1407 - -
Acco06g1077 2040 MobiDBLite consensus disorder prediction 161 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1077 Acco-ChrAcco06 7297544 7310907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1077 521 793 RAD5 or RAD16-like Gene Family AT5G43530 29.193 6.24e-28 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco06g1077 SNF2_N 6.2e-70 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1202 02 8824130 8828993 Acco06g1077 06 7297544 7310907 CCT