Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1076 ATGGATGCCCGCAAGAGAGGAAGGGTTGAAGCTGGGCCCAATGTTAATGGCGGTACAAAAAAGTTCAAGCAAGAAATGGACTCCTTATCATCTGCTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACCGCTGGCTGCCCGTTTGGTGAGAGCTGCCACTTCTTGCACTATGTTCCTGGTGGTTACAATGCTGTTGCTCAGATGATGAATCTAACACCAGCTGTGCCTCCAGCATCTAGAAATATTGTTGCCCCATCACCTGTTCATAATGGGGCTGCACCGCCGGCTGTTAAAACCCGTGTATGCAATAAATATAACACTGCTGAAGGCTGTAAGTTTGGTGACAAGTGTCACTTTGCCCATGGTGAGTGGGAACTTGGTAAGTCTATTGCTCCAGCAGTGGATGATCATCGTGCCATGGGACCTATTTCCGGCCGTTCAGCTGGTCGAGTGGAGCCTCCTCCAGGTCCTGTTGCTAGTTTTGGTGCCAATGCTACTGCTAAGATCAGTGTTGAAGCTTCATTGGCTGGAGCTATCATAGGAAAGGGTGGTGTGAACTCCAAGCAGATCTGCCGTCAAACAGGAGCCAAACTCTCAATTCGGGATCATGAGTCAGATCCAAATCTTAGGAACATCGAGCTTGAAGGTAGTTTTCAGCAAATCCAGAGTGCGAGCAACATGGTAAAAGAGTTACTGGTGACATTATCGATGTCAGCGCCGTCTAAAACCCATGGCGGAGCTCCGGGAGCACCAGGCCATCATGGAAGTAACTTTAAGACAAAGCTGTGTGAGAACTTTGCCAAGGGGTCTTGCACCTTTGGAGAAAGATGTCACTTCGCGCATGGAGCTGCTGAATTACGTAAAGCAGGGGTATGA 885 0.487 MDARKRGRVEAGPNVNGGTKKFKQEMDSLSSAVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNAVAQMMNLTPAVPPASRNIVAPSPVHNGAAPPAVKTRVCNKYNTAEGCKFGDKCHFAHGEWELGKSIAPAVDDHRAMGPISGRSAGRVEPPPGPVASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGSFQQIQSASNMVKELLVTLSMSAPSKTHGGAPGAPGHHGSNFKTKLCENFAKGSCTFGERCHFAHGAAELRKAGV 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1076 294 FunFam Zinc finger CCCH domain-containing protein 255 291 - -
Acco06g1076 294 ProSiteProfiles Type-1 KH domain profile. 167 231 - -
Acco06g1076 294 MobiDBLite consensus disorder prediction 1 22 - -
Acco06g1076 294 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 156 237 IPR036612 GO:0003723
Acco06g1076 294 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Acco06g1076 294 PANTHER CCCH ZINC FINGER/TIS11-RELATED 27 157 IPR045877 GO:0003729
Acco06g1076 294 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Acco06g1076 294 Pfam KH domain 170 233 IPR004088 GO:0003723
Acco06g1076 294 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Acco06g1076 294 Gene3D K Homology domain, type 1 164 259 IPR036612 GO:0003723
Acco06g1076 294 ProSiteProfiles Zinc finger C3H1-type profile. 260 287 IPR000571 GO:0046872
Acco06g1076 294 SMART kh_6 166 236 IPR004087 GO:0003676
Acco06g1076 294 Gene3D - 260 292 - -
Acco06g1076 294 Gene3D - 95 131 - -
Acco06g1076 294 CDD KH-I_AtC3H36_like 170 235 - -
Acco06g1076 294 SUPERFAMILY CCCH zinc finger 98 129 IPR036855 GO:0046872
Acco06g1076 294 SUPERFAMILY CCCH zinc finger 259 290 IPR036855 GO:0046872
Acco06g1076 294 FunFam Zinc finger CCCH domain-containing protein 94 131 - -
Acco06g1076 294 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Acco06g1076 294 SMART c3hfinal6 260 286 IPR000571 GO:0046872
Acco06g1076 294 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Acco06g1076 294 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Acco06g1076 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 285 IPR000571 GO:0046872
Acco06g1076 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1076 Acco-ChrAcco06 7286958 7289689 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco06g1076 KH_1 1.3e-11 CL0007