Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco06g1063 | ATGGGGGAACATACTTCTGATGAGATGAACCTTGATTTGAATTTGGATCCCATCCCGGAGCCACCAGCCGACTCCATAGCCGGCGAACATGTGGTCTCAATAGATTACTGGACCCAGCGAGGTCTTCACCGAATTAATGAAGGTCGTCGGTATAGGTCTCGGCTACAATGGAGATCACGGCATCTTCCCGTCTCACCCGAGGCCCAGCGACATGATAATCCACCACCGCCTCAATCCCAAAATTTTCCGATGGAATTAAATCAATTTGTGGAGACCCCTGCCGTTGGGACTGCCCTACAGGTTGATCAGGACGGTTTTGAGGCTGACCAAAGATCAGAGGAGATACCTAAAGCATGTGAAAATAACAACAGCTTAACGAAGGGCGAGGAGTTAGAGAAGAAGGATGATTTTGAAAAGGGTTTTGGCGATGATGGGGGCTTTTTCGATTGTAATATCTGTTTGGACCTTGCCAAGGATCCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCTTGCCTCTATCGATGGCTACATATGCAATCAGATGCGAAGGAATGTCCTGTTTGTAAGGGCGAGGTGTCCTACCAAAATATCACCCCAATATATGGTCGTGGAAACAACAATGTTCAAGACCCTGAGGAGGATCCCACTCTTACGGTTCCTCGTAGGCCACACGCAAGGCGGGTTGAGGGTTTAAGACCAACCTCTCAGAGAAGTGCATTTGGAAATTCCTTGGAGGAGGTGATTAGGCTTTTCGGTGGAAGAGATGGTCTATCTCGCGGTGTGGTTCGCCCGCACAACCCTGCTGAAACTGTGCGTCAAACAGCAGAGAGAAGAAGATTATTGCTAAACAGGTTTTTGACTTCTCGAGCAATTCGGACAGAGCAAAATCTTGAAGCATCCCCCGTTGAAGCAGGATATTTAACGGGAAACAATATGAGTAATCTTGACGCTAGGGATAATCGCAGGCTGCAATCGCTTCTGCTTCGAACAACACGGTCCCACAGAGCAACACTCTCATCATTTTCCTCAACCTTAAGCTCGGCGGAGGAAGTGGTGGAGACATATTTCCGGACCCGGGCAGGAGCGGGAAATCAAGAACAGGCTTCACAGGTGGATGACAGAGATTCATATTTAAGCATTGCTGCTGTTATAAATTCAGAGATTCAAGTGGACACTGCCGTAGAAACTGATTCCATGTTGTCATTGTCCACGTCCTCTTCTAGAAGGAGAAACGATTCTTCTAGAGTTTCTGATGTTGATACTGGAGACTCTCGTGCTCCCAGGCCTACGCGAAGACGTTTACATTGA | 1314 | 0.4764 | MGEHTSDEMNLDLNLDPIPEPPADSIAGEHVVSIDYWTQRGLHRINEGRRYRSRLQWRSRHLPVSPEAQRHDNPPPPQSQNFPMELNQFVETPAVGTALQVDQDGFEADQRSEEIPKACENNNSLTKGEELEKKDDFEKGFGDDGGFFDCNICLDLAKDPVVTCCGHLFCWPCLYRWLHMQSDAKECPVCKGEVSYQNITPIYGRGNNNVQDPEEDPTLTVPRRPHARRVEGLRPTSQRSAFGNSLEEVIRLFGGRDGLSRGVVRPHNPAETVRQTAERRRLLLNRFLTSRAIRTEQNLEASPVEAGYLTGNNMSNLDARDNRRLQSLLLRTTRSHRATLSSFSSTLSSAEEVVETYFRTRAGAGNQEQASQVDDRDSYLSIAAVINSEIQVDTAVETDSMLSLSTSSSRRRNDSSRVSDVDTGDSRAPRPTRRRLH | 437 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco06g1063 | 437 | CDD | RING-HC_AtRMA-like | 150 | 191 | - | - | |
| Acco06g1063 | 437 | FunFam | Zinc finger family protein | 131 | 204 | - | - | |
| Acco06g1063 | 437 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 115 | 231 | IPR013083 | - | |
| Acco06g1063 | 437 | Pfam | Zinc finger, C3HC4 type (RING finger) | 150 | 190 | - | - | |
| Acco06g1063 | 437 | MobiDBLite | consensus disorder prediction | 413 | 431 | - | - | |
| Acco06g1063 | 437 | ProSiteProfiles | Zinc finger RING-type profile. | 150 | 191 | IPR001841 | - | |
| Acco06g1063 | 437 | MobiDBLite | consensus disorder prediction | 403 | 437 | - | - | |
| Acco06g1063 | 437 | SUPERFAMILY | RING/U-box | 145 | 203 | - | - | |
| Acco06g1063 | 437 | ProSitePatterns | Zinc finger RING-type signature. | 165 | 174 | IPR017907 | - | |
| Acco06g1063 | 437 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 119 | 316 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
| Acco06g1063 | 437 | SMART | ring_2 | 150 | 190 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco06g1063 | Acco-ChrAcco06 | 7195238 | 7196551 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco06g1063 | 1 | 426 | C3H Transcription Factor Family | AT3G58030 | 46.622 | 1.04e-104 | 316 |