Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1062 ATGGAGCTGGCTCTGAGCTTGGGAGACGCCCCTAAGGGCTTTCCTATATTGGACAAGGCCCCAAGAATGGCTAACAAGGAACCTGGTTTCCGCATATCTCTTGGTCAGAATCTCGCCGAGAAAGTTTCAGAGCATGATAGTGTCCAAGATGAGACCAGAGCCTCCTCAGATCCGCCTCTTCAGCTTGACCTTCTTCCTTTCACGCCCATTCCGCGACCCCACCCACCTTCTTATCTTCGGATTCCTTGGCTCTCTGATTCTCTGGGATCTCAACGTTTCTCGCCGGATGGGGGAGCGAAGGCGTTGGACGTGAACCGTTTGCCGGCGGCAGGAGCGGAGGAGGCAGAGGACGGTACTCCACCGTCCTCGTCTCCTAATAGTGTATCGTCGTTTCACATGGACTTCTACATGAGGAGTGGTAACGCTGGCAGTAAAAGCAAGAGAGAGCTTGATGGTGACGGTGAGAGAACTAACTCCAGGGCCAGTGACGATGACGAGAACGGGTCGACTCGTAAGAAACTCAGACTCTCCAAGGAACAATCAGCTTTTCTTGAAGAGAGCTTCAAAGAACATTCTACCCTTAATCCTAAGCAGAAACTGGTTCTAGCTAAACAGTTAAATCTTCGCCCACGCCAAGTAGAAGTTTGGTTTCAAAACAGAAGGGCAAGGACAAAGTTGAAGCAGACGGAAGTAGATTGTGAGTATCTGAAGAGATGTTGTGAGACGCTGACGGAAGAGAATAAGAGGTTGCAGAAGGAGCTGCAGGAATTAAGGGCATTAAAGACGTCACAGCCATTTTACATGCAGCTTCCGGCTACCACTCTAACAATGTGTCCCTCATGTGAGAGGGTGGCCACCAACTCATCGTCTTCTACCTCCGCCGTCACTATCCCTAACAATGCTTCTCAGGCGGCGGCATCGCCACTCATGTCTCTTACGAACCCCAGAATAGTCCCTCCCTTTGATCATGAGCATAATGTCCAGCCTCATAGCACTCCTTCCTCGTGA 1008 0.5069 MELALSLGDAPKGFPILDKAPRMANKEPGFRISLGQNLAEKVSEHDSVQDETRASSDPPLQLDLLPFTPIPRPHPPSYLRIPWLSDSLGSQRFSPDGGAKALDVNRLPAAGAEEAEDGTPPSSSPNSVSSFHMDFYMRSGNAGSKSKRELDGDGERTNSRASDDDENGSTRKKLRLSKEQSAFLEESFKEHSTLNPKQKLVLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENKRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSSSSTSAVTIPNNASQAAASPLMSLTNPRIVPPFDHEHNVQPHSTPSS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1062 335 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 43 301 - -
Acco06g1062 335 SMART halz 227 270 IPR003106 GO:0006355|GO:0043565
Acco06g1062 335 SMART HOX_1 169 231 IPR001356 GO:0003677
Acco06g1062 335 MobiDBLite consensus disorder prediction 41 62 - -
Acco06g1062 335 MobiDBLite consensus disorder prediction 144 176 - -
Acco06g1062 335 Pfam Homeodomain 171 225 IPR001356 GO:0003677
Acco06g1062 335 MobiDBLite consensus disorder prediction 313 335 - -
Acco06g1062 335 Gene3D - 175 225 - -
Acco06g1062 335 MobiDBLite consensus disorder prediction 119 134 - -
Acco06g1062 335 SUPERFAMILY Homeodomain-like 161 228 IPR009057 -
Acco06g1062 335 ProSitePatterns 'Homeobox' domain signature. 202 225 IPR017970 GO:0000981|GO:0006355
Acco06g1062 335 FunFam Homeobox-leucine zipper protein 18 156 232 - -
Acco06g1062 335 Pfam Homeobox associated leucine zipper 227 261 IPR003106 GO:0006355|GO:0043565
Acco06g1062 335 Coils Coil 233 263 - -
Acco06g1062 335 CDD bZIP 220 259 - -
Acco06g1062 335 CDD homeodomain 171 228 IPR001356 GO:0003677
Acco06g1062 335 MobiDBLite consensus disorder prediction 111 176 - -
Acco06g1062 335 ProSiteProfiles 'Homeobox' domain profile. 167 227 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1062 Acco-ChrAcco06 7182481 7183779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1062 159 321 Homeobox Transcription Factor Family AT4G37790 67.066 4.46e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco06g1062 Homeodomain 3.8e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1217 02 8982334 8983677 Acco06g1062 06 7182481 7183779 CCT
Acco06g1062 06 7182481 7183779 Acco06g1062 06 7182481 7183779 ECH