Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1034 ATGGACCATTGGACAACCCTATTTGCCTTGGCAACTACGGTGCCACAAGTGGCCTTCCCTATCCCTCTGCATGAAAATGGAGCAAAAGCAGCCGCGCGCACAACCCTCGTCCCCTGTCTCCCACGCCTTCGTCAAACGTTCAGGATGGAATCTCAGGTGAAGCATGCTGTGGTTGTTAAAGTCATGGGACGCACTGGATCCAGAGGGCAAGTGACTCAAGTTAGAGTCAAGTTTTTGGATGACCATAACCGTTATATCATGAGGAATGTGAAAGGACCCGTGAGAGAAGGAGACATTCTTACCTTGCTGGAGTCTGAAAGGGAAGCTAGAAGACTTCGCTAG 342 0.5029 MDHWTTLFALATTVPQVAFPIPLHENGAKAAARTTLVPCLPRLRQTFRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDHNRYIMRNVKGPVREGDILTLLESEREARRLR 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1034 113 ProSitePatterns Ribosomal protein S28e signature. 104 112 IPR028626 -
Acco06g1034 113 Gene3D - 46 113 IPR012340 -
Acco06g1034 113 FunFam 40S ribosomal protein S28 47 113 - -
Acco06g1034 113 PANTHER 40S RIBOSOMAL PROTEIN S28 49 113 IPR000289 GO:0003735|GO:0005840|GO:0006412
Acco06g1034 113 SUPERFAMILY Nucleic acid-binding proteins 49 113 IPR012340 -
Acco06g1034 113 Pfam Ribosomal protein S28e 52 112 IPR000289 GO:0003735|GO:0005840|GO:0006412
Acco06g1034 113 CDD S1_S28E 54 113 IPR000289 GO:0003735|GO:0005840|GO:0006412
Acco06g1034 113 Hamap 30S ribosomal protein S28e [rps28e]. 49 113 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1034 Acco-ChrAcco06 6969169 6972739 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1034 49 113 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 90.769 1.62e-36 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g1034 06 6969169 6972739 Acco06g1034 06 6969169 6972739 ECH