Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1024 ATGCTTGGGTTCAAAAGCTTCTTGACCCGTACGGGAAGGATCAAGAAAAAGAACAGAAACAAGCGCAAATTCAAAGGCCAACTCGCTTTCCATAAGCAAAAATGCATTTCCCGTAACGATGAATTGCTAGACCGAAATGGAGTGAAGGAAGATGCTGAAGGTTTCAGGCTCAAAACCTATGCTTCATCACACACTTATTGGGTTCAACCTTTGGGCAATCTCTATCTCAACACAGGTTCTATCAACTGCAGAGATACAGGTTTAGGTAATCTGCACACTCTGACAGATGAGCTTGTTCTTGAAATTCTGGGATTGTTGAGTGGGAACGACTTGGGGGTTTCAGCGACAGTGAGCAAGTGTTTTTATGTTTTCACTAATCATGAACCCATTTGGAGGAATCTTGTATTGGAAAATCTTAGTGGTGGCTTTCGGTACAATGGCTCTTGGAAATCTACTTATATTGGTGCTTGCTACCCTTCATATGTATCAAACATTGCCGTTCTGAATTTGAAAGTGAGAGACTTTTATTCTGATTATCTTTTTCAAAGTTGGCTCTGTGGTAATCTTGAAATGAAACCAGAATGGCTGGTGAGAGATAATATAGTTCGGAAAAGAGGCATTTCGGTTGAAGAATTCGTCAAGAATTTTGAGGAGCCTAATAAGCCGGTATTGTTGGAAGGATGTCTTGATAATTGGGATGCTCTGAAGAAATGGGATAGAGATTATTTGGTGCAGTTGTGTGGTGATGTTAAGTTTTCAGTTGGTCCGGTAGAGATGAGGCTTGAAGACTATTTTCAATATTCAGATCAAGTGAGAGAAGAAAGACCATTGTACCTGTTTGATCCAAAGTTTGCTGAAAAGGTTCCAAATTTGGATTCCCAATTTGACGTTCCGGCTTACTTCCAGGAGGACTTGTTTAGTGTCTTGGGCAAGGAGAGACCAGACTACAGGTGGGTTATTGTTGGGCCAGCTGGATCAGGATCGTCTTTCCATGTTGATCCAAATTCTACTTCGGCTTGGAATGCTGTAATCAAGGGCTCTAAGAAGTGGATATTATTTCCTCCTGATGTGATTCCACCTGGAGTTCATCCTAGCCCTGATGGTGCAGAGGTTGCATCTCCTGTTTCAATAATTGAGTGGTTTATGAACTTTTATGGTGCGACAAAAAGTTGGAAGAAAAAACCTATTGAATGCATCTGTAAAGCTGGGGAGGTCGTCTTTGTGCCTAATGGATGGTGGCATTTGGTGATCAACTTGGAGGAGTCCATAGCCATAACCCAAAATTTTGTCAGTAGGAGAAACTTGCTTAATGTCTTGGATTTTCTTAAAAAGCCGAATGCGAGCGTGCTAGTTTCCGGAACAAGAGATCGAGTTAATTTGTATGATAAGTTTAGAAATGCTATAGAGGATTCTTTTCCTGGAATAATTGATGAGCTGACCCGGAAAGATGAAGAGAAACAGATTCTGCAGAAGAAACTTTCCTTCTGGGATTCTGTCACAGATTCTAGAGTGGGAGCTTTTAAGTTCTCTTTCTAG 1536 0.4108 MLGFKSFLTRTGRIKKKNRNKRKFKGQLAFHKQKCISRNDELLDRNGVKEDAEGFRLKTYASSHTYWVQPLGNLYLNTGSINCRDTGLGNLHTLTDELVLEILGLLSGNDLGVSATVSKCFYVFTNHEPIWRNLVLENLSGGFRYNGSWKSTYIGACYPSYVSNIAVLNLKVRDFYSDYLFQSWLCGNLEMKPEWLVRDNIVRKRGISVEEFVKNFEEPNKPVLLEGCLDNWDALKKWDRDYLVQLCGDVKFSVGPVEMRLEDYFQYSDQVREERPLYLFDPKFAEKVPNLDSQFDVPAYFQEDLFSVLGKERPDYRWVIVGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKSWKKKPIECICKAGEVVFVPNGWWHLVINLEESIAITQNFVSRRNLLNVLDFLKKPNASVLVSGTRDRVNLYDKFRNAIEDSFPGIIDELTRKDEEKQILQKKLSFWDSVTDSRVGAFKFSF 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1024 511 FunFam F-box protein At1g78280 181 431 - -
Acco06g1024 511 Gene3D Cupin 184 431 - -
Acco06g1024 511 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 88 508 - -
Acco06g1024 511 SUPERFAMILY F-box domain 87 154 IPR036047 GO:0005515
Acco06g1024 511 Pfam Cupin-like domain 210 429 IPR041667 -
Acco06g1024 511 Gene3D - 86 159 - -
Acco06g1024 511 SUPERFAMILY Clavaminate synthase-like 203 443 - -
Acco06g1024 511 ProSiteProfiles JmjC domain profile. 286 446 IPR003347 -
Acco06g1024 511 SMART cupin_9 284 446 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1024 Acco-ChrAcco06 6909924 6912206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1024 79 435 Glycosyltransferase AT1G78280 38.525 6.20e-77 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Acco06g1024 Cupin_8 7.9e-25 CL0029