Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1008 ATGGAAGCTTACCCCGGTCTGATACAATTATTTGACCAGTCTCTTCGAAGGACCATTTTATTTGCTTATATTGTGATTCATTCAGATAGGGATTCTCCCATATCATATCCTTGTGTATTTTCATTCCAAAATCCTTCCTCCTCTGCAGCCTCCAACATGAACGACTTGTTCAGCTCCTCCTTCTCCCGCTCCGACGAAGACAACAACCCCCACCATGTCATCCAGATGACGGGGCTGACGGGCGGCGACAGCCTCGAAAAGTTCTTCGAGGAAGTGGATTCCCTCAAGAAAGAGCTCAACGAGCTGGAGCGCCTCAACCAATCCCTCCGAACCTCCCATGAACAGAGCAAGACTCTTCACAATGCTAAGGCCGTCAAGGACCTTCGCTCTCGCATGGACTCCGACGTCGCCCTCGCCCTCAAGAAAGCCAAGCTCATCAAGCTCCGCCTCCAGGCCCTCGACCGCTCCAACCAAGATTACCGCAGCCTTCCCGGCTGCGGACCCGGCTCGTCTTCCGACCGGACTCGAACTTCCGTGGTCAACGGCTTGATAAAGAAGCTCAAAGACTCCATGGACAGCTTCAACAACCTCAGGCAACAAATTTCCACCGAATACAAAGACACCGTACGACGTAGGTACTACACGGTCACCGGCGAGAACCCCGACGACAAAACCATCGACCTCCTTGTCTCTACTGGGGAGAGTGAAACTTTTCTGCAGAAGGCGATTCAGCAGCAAGGAAGAGCGAGCGTGATGGACACGATCCAAGAGATTCAGGAGAGGCATGACGCGGTGAAAGAGATAGAGAGGAATCTAAATGAGCTGCACCAGGTGTTCTTGGACATGTCAGTGCTGGTTCAAACTCAGGGGGAGCAGCTGGATGATATAGAGAGCCACATGGCAAGAGCTGATTCGTACGTGAGGGGTGGGGTGCAGCAGTTGCAAGTTGCGAAGAAGCACCAGAAGAATACCCGCAAATGGACTTGCTTTGCCATTATACTGCTCCTCATTATTATATTGGTTATAGTTCTGCCTATAGTCTTAAGAAAGTGA 1053 0.5119 MEAYPGLIQLFDQSLRRTILFAYIVIHSDRDSPISYPCVFSFQNPSSSAASNMNDLFSSSFSRSDEDNNPHHVIQMTGLTGGDSLEKFFEEVDSLKKELNELERLNQSLRTSHEQSKTLHNAKAVKDLRSRMDSDVALALKKAKLIKLRLQALDRSNQDYRSLPGCGPGSSSDRTRTSVVNGLIKKLKDSMDSFNNLRQQISTEYKDTVRRRYYTVTGENPDDKTIDLLVSTGESETFLQKAIQQQGRASVMDTIQEIQERHDAVKEIERNLNELHQVFLDMSVLVQTQGEQLDDIESHMARADSYVRGGVQQLQVAKKHQKNTRKWTCFAIILLLIIILVIVLPIVLRK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1008 350 SUPERFAMILY t-snare proteins 84 310 IPR010989 GO:0016020|GO:0016192
Acco06g1008 350 Pfam Syntaxin 87 290 IPR006011 GO:0016020
Acco06g1008 350 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 82 212 - -
Acco06g1008 350 CDD SNARE_syntaxin1-like 254 315 - -
Acco06g1008 350 FunFam Syntaxin 132 248 348 - -
Acco06g1008 350 Coils Coil 85 115 - -
Acco06g1008 350 Gene3D - 243 348 - -
Acco06g1008 350 Coils Coil 255 275 - -
Acco06g1008 350 SMART SynN_4 80 206 IPR006011 GO:0016020
Acco06g1008 350 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 255 317 IPR000727 -
Acco06g1008 350 Pfam SNARE domain 291 343 IPR000727 -
Acco06g1008 350 CDD SynN 85 242 IPR006011 GO:0016020
Acco06g1008 350 Coils Coil 184 204 - -
Acco06g1008 350 ProSitePatterns Syntaxin / epimorphin family signature. 261 300 IPR006012 GO:0005484|GO:0006886|GO:0016020
Acco06g1008 350 Gene3D - 82 215 - -
Acco06g1008 350 SMART tSNARE_6 250 317 IPR000727 -
Acco06g1008 350 PANTHER SYNTAXIN 102 339 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1008 Acco-ChrAcco06 6797517 6799085 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1008 77 329 SNARE and Associated Proteins AT3G11820 73.123 1.03e-138 395