Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1007 ATGCCACCCCTTGGATACCATATTCCAAGAGGTTTTTTCATTTTTGTCACAGCCCTGAATGAGCTCAATACGCTTTTTGCTGGACCAGATATACCTAGTGCTGTCAACCAGGTTGAAAATGGGGACCTGGGAACGCCATTAACAATCACACAGCGCATTACGCGGTCAAATGAAATGGAACGGACGGTAAAGCATACGGCGCCGTTGAAAAAAGAGCCACCTTTACCAGCTGCTCTGGACAGTAATTATAGTTTATCCATGAATGTAGAGAAGAAGAGCCAGCAGTTTAGCCTGCGTCCAAGTGATCTCCTATCCCTACCTCCATTTGACTCCCAATCCTACTGCTTCAATAAATCTCCCAACTACTCGATTCCAGTCTTCCTCCCATCTGCATCTGGGTTTCCTGGAAATTCTTTGATTTCATCTGTTTGTTGTGTTAGAATGAATGACTTGTTCTCCGGCTCCTTCTCTCGCCTCCGCCATGAGCAGGCATCGCCGGACCATCATGTCATCGAGATGGCGCCCACAACGCCCACCGGCGGTGTCAACCTCGACAGGTTCTTCGACAACGTCGAGTCGATCAAGGACGAACTCAAGGAGCTGGATCGCCTTAACCATAACCTCCAGAGCTCAAACGAGCAGAGCAAGACCCTTCACAACGCAAAGGCCGTCAAGGACCTCCGCGCTCGCATGGACGCCGATGTTGCGCTTGCTCTGAAGAAGGCCAAGCTCATCAAGGTCAAGCTGGAGGCTCTGGAGCGATCCAACGCGGCCAACCGTAGCTTGCCTGGTTGCGGGCCCGGATCCTCGTCTGACAGGACCCGCACCTCTGTGGTCAGCGGGTTGAAAAAGAAGCTGAAGGACTCCATGGAGGGCTTCATTAACCTCAGGCAGCAGATCTCATCGGAATACCGTGAGACTGTGCAACGCAGGTATTTCACGGTCACCGGCGAGAACCCCGACGAGAAGACCGTCGACCTCTTGATCTCTACAGGTGAGAGTGAGACGTTCCTTCAGAAAGCCATCCAAGAGCAGGGTAGAGGTAGGATTCTGGACACCATAAGTGAAATTCAAGAGAGGCATGATGCTGTGAAAGAGATAGAGAAGAATCTGAAGGAGTTGCATCAAGTGTTTCTTGACATGGCAGTACTGGTGGAATCTCAAGGAGAGCAATTGGATGACATAGAGAGCCACGTGGCGAGAGCTCAATCGTTTGTGAGGGGTGGAGCCGAGCAGTTGCAGACCGCAAGGAAACACCAGAAAAATACCAGGAAATGGACCTGTTATGCTATCATAATTCTCCTAGTGATCATCTTGTTTGTGGTTCTCTTCACTGTTAAACCGTGGGAACATAACGGTGGGGGTGGCGGCGGCGGCAATCAGCCAGCTTCACCTCAAACACCTCCTCCGCCTCCTGCAAGATAG 1425 0.5116 MPPLGYHIPRGFFIFVTALNELNTLFAGPDIPSAVNQVENGDLGTPLTITQRITRSNEMERTVKHTAPLKKEPPLPAALDSNYSLSMNVEKKSQQFSLRPSDLLSLPPFDSQSYCFNKSPNYSIPVFLPSASGFPGNSLISSVCCVRMNDLFSGSFSRLRHEQASPDHHVIEMAPTTPTGGVNLDRFFDNVESIKDELKELDRLNHNLQSSNEQSKTLHNAKAVKDLRARMDADVALALKKAKLIKVKLEALERSNAANRSLPGCGPGSSSDRTRTSVVSGLKKKLKDSMEGFINLRQQISSEYRETVQRRYFTVTGENPDEKTVDLLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKEIEKNLKELHQVFLDMAVLVESQGEQLDDIESHVARAQSFVRGGAEQLQTARKHQKNTRKWTCYAIIILLVIILFVVLFTVKPWEHNGGGGGGGNQPASPQTPPPPPAR 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1007 474 FunFam Syntaxin 132 347 447 - -
Acco06g1007 474 SMART tSNARE_6 349 416 IPR000727 -
Acco06g1007 474 Pfam Syntaxin 186 389 IPR006011 GO:0016020
Acco06g1007 474 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 354 416 IPR000727 -
Acco06g1007 474 CDD SynN 184 341 IPR006011 GO:0016020
Acco06g1007 474 MobiDBLite consensus disorder prediction 453 474 - -
Acco06g1007 474 PANTHER SYNTAXIN 210 437 IPR045242 -
Acco06g1007 474 SUPERFAMILY t-snare proteins 182 409 IPR010989 GO:0016020|GO:0016192
Acco06g1007 474 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 181 311 - -
Acco06g1007 474 Coils Coil 184 221 - -
Acco06g1007 474 CDD SNARE_syntaxin1-like 353 415 - -
Acco06g1007 474 Gene3D - 351 447 - -
Acco06g1007 474 Pfam SNARE domain 390 442 IPR000727 -
Acco06g1007 474 Gene3D - 182 314 - -
Acco06g1007 474 SMART SynN_4 179 305 IPR006011 GO:0016020
Acco06g1007 474 ProSitePatterns Syntaxin / epimorphin family signature. 360 399 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1007 Acco-ChrAcco06 6789281 6795243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1007 175 474 SNARE and Associated Proteins AT3G11820 75.000 3.47e-153 436