Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1002 ATGAAGGACCCCGTCACTGTGTCCACCGGTATTACCTATGACCGTGAGAGCATCGAGAAATGGCTCTTCTCCGCCAACAACTTCACCTGCCCCGTTACCAAACAGCCCCTATCAGATAACACCGATCTCACCCCCAACCACACCCTTCGCCGGCTGATTCAGGCCTGGTGTACCATGAACGCTTCACACGGTATCGAAAGAATCCCCACCCCTAAGCCTCCAATCACCAAAACCCAAATTGCCAAGCTCATCAGAGACGCTTCCCGATCACCTCACTCCCTCACTTCATGTCTCCGGCAACTCAAATCCATCGCTTCCGACAGCGAAACAAACCGACGCTGCATGGAAGCTTCCGGTGCTGCTGAGTTCTTAGCATCTATAATCATGTTCACAGCCTCATCACCCCAAGTGGACCCCAGCCAAGACGAGGCCTTAAGCATCCTCCACACCCTCCACATGTCCGAAGCTACCTTAAAATCTCTCATCGCCTTCAGAAACGGAGACCTTATAGATTCCTTAATCACAGTCATGCAGAAAGGAGTGTACGACTCACGAGCCTACGCAGTTCTTTTACTCAACTCAATGTTCCAAGTTGCTGATTCTACACGCTTATTCAACATAAGATATGAATTATTTGTTGAATTAGAACAAATCCTCAAAGATCAAATCTCCCAGCAGGCTACAAATGCGACGCTGCAAACACTGATCCAACTCTGCCCATGGGGAAGAAACAGGTACATAGCGGTAAAAGTAGGGTGTGTTTGGGCAATAATAGAACTGCTTCTGGATTGTGAGGACAGGAAGGTGTGTGAGATGATGCTGGTGGTGTTGGATATGCTGTGTGGGTGCGCCGAGGGAAGAGCGGAGCTGTTGAGGCACGGGGCGGGGATCGCCGTCGTGTCCAAGAAGATTCTGAGGGTTTCCATGATGGCCAACGAGAGGGCGGTGAGGATTCTGCTGTCAATTTCCAAGTACTCGGCGACACCAAGTGTGGTGGTGCAGGAAATGATACAGGTGGGTGTGATGGGGAAGCTGTGTTTGGTGATGCAAACGGAGAGTGGAAGCAAGACGAAGGAGAAGGCTAGAGAGATTCTCAAACTGCATGCTCACGCTTGCCACAACTCTCCATGCATGCCTAGCACTCTGGGTTCCTACTTAGCTTGA 1164 0.506 MKDPVTVSTGITYDRESIEKWLFSANNFTCPVTKQPLSDNTDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPITKTQIAKLIRDASRSPHSLTSCLRQLKSIASDSETNRRCMEASGAAEFLASIIMFTASSPQVDPSQDEALSILHTLHMSEATLKSLIAFRNGDLIDSLITVMQKGVYDSRAYAVLLLNSMFQVADSTRLFNIRYELFVELEQILKDQISQQATNATLQTLIQLCPWGRNRYIAVKVGCVWAIIELLLDCEDRKVCEMMLVVLDMLCGCAEGRAELLRHGAGIAVVSKKILRVSMMANERAVRILLSISKYSATPSVVVQEMIQVGVMGKLCLVMQTESGSKTKEKAREILKLHAHACHNSPCMPSTLGSYLA 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1002 387 PANTHER WDSAM1 PROTEIN 1 379 IPR045185 GO:0061630
Acco06g1002 387 Gene3D - 76 379 IPR011989 -
Acco06g1002 387 SMART Ubox_2 1 56 IPR003613 GO:0004842|GO:0016567
Acco06g1002 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 67 IPR013083 -
Acco06g1002 387 ProSiteProfiles U-box domain profile. 1 63 IPR003613 GO:0004842|GO:0016567
Acco06g1002 387 Pfam U-box domain 1 60 IPR003613 GO:0004842|GO:0016567
Acco06g1002 387 SUPERFAMILY RING/U-box 1 64 - -
Acco06g1002 387 CDD RING-Ubox_PUB 1 41 IPR045210 -
Acco06g1002 387 SUPERFAMILY ARM repeat 84 373 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1002 Acco-ChrAcco06 6749001 6750164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1002 1 387 U-box Gene Family AT3G52450 54.067 3.68e-148 425