Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1001 ATGGCGACGTACTTTCATGGCAATCCCGAAATCCAACCACCGGATGGCCTCCAAACTCTGGTTCTCATGAACCCCGGCTACATCCACTACCCTGACACCCCGCCGCCGCACCCCAGCAACTTTGTCTTCCTCAACTCCATCGCAGCCGGCAACAGCTCCCTTACTCCCCAAAATCTCCATCACGTGCCACCCAATCACACCCAACAATTCGTCGGCGTCCCTCTGCCGACGGTCACCGCCGCCTCCTCCTCCCAGGACCTCGGCCAGCAACACTCGGTGCACCCTCATCAAGATGGATCCACCATGCATGGATTTGTGCCTCGCATGCAGTGCAATCTCTGGAACCAAATCGATCCAAACGCGACGGCGCGTGAGACTCCACGAGCGCAGCAGCAGGGACTGTCACTGAGCCTGTCCTCCCAGCAAGCTGGAATGGGCTCTTTCCGTGTTGATCGTGACGTGGCATCGCAGGGCCAAGCGCCTGCTATTTCTGGCGAAGACGTTCCCGGGTCGGGCGGGTCGCCGTCTTCGGTTTCCGGGGTGACCAACGTGAACGGTGTTACAGGGATTCAGAGTTTGCTCCTAAGCTCCAAGTATTTGAAAGCAGCACAGGAACTCCTCGACGAGGCCGTCAATGTTAACAGCGGCATCAAGACTGAACTGGGAAAGAAGAGCGGTGGGGCCCATACTAAAGCCACCGGGGAGACATCCGGAAAAGCCGCTGGTGCCGACAGCGGAGAAGGAAACGCTAAACATGCCTCTGAGCTATCTGCCGTGGAGAGACAAGAAATTCAGATGAAGAAGGCTAAGCTAATCAGCATGCTTGATGAGGTGGATCCGAGGTACAGGCAATACCACCAGCAGATGCAGATAGTTATTTCTTCATTCGAACAAGTTGCGGGAATTGGGGCAGCCAGAACATACACAGCCCTTGCGCTTCAAACAATCTCCAAGAAATTTAGGTGCTTGAAAGATGCAATATCAGCCCAAATTGGAGCAGCAAACAAGAGCTTAGGAGAAGAAGATTGCTTTGGAAGCAAGATGGAAGGTTCGAGGCTCAAGTACGTGGACCATCACCTTCGCCAACAGCGAGCTCTCCAACAATTGGGAATGATCCACCACAATGCCTGGAGACCCCAGAGAGGGTTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACACTTCCTCCACCCTTATCCCAAGGATTCTGACAAGCACATGCTTGCTAAGCAAACAGGCCTCACTAGGAGCCAGGTTTCGAATTGGTTCATAAATGCTCGAGTTCGGCTCTGGAAACCAATGGTGGAAGAAATGTACGTGGAGGAGATGAAGGAACAAGGACAAAACGGATCTGAAGATAAATCAAGCAGGAGCGGTGAAGTTCCTGCTATTAAAACCGCTGCTCCACGACAGAAACCTGCCACTGAAACGAACGCCAGAAGCCTCAACTCCAACCAAGACTCGCCTTCAAACCACAACACTTCTACAGTTTCAGTTTCTAAACCATTAATATCATCAGCCACTGGGGATAGTGTCAGAAACCAGTTTGGATTCAGCTTCATGGGATCATTAGAGCTACAAGGGATCACGCAAGGAAGTCCCAAGAAACCAAGAAACCAAGAAATTCTACACTTCCCAACCATGGACGTGAAGCCCCATGAGGCCAATAACGAGCAACTTACAATAAAATTTGGAGAGGAGAGGCAGGGGAGGGATGAATACTCATTCATGGGAACCCAAGCAAACTTCATCGGAGGTTTTGGACAATACCCAATTGAGGAAATTGGAAGGTTCGAAGCAGAGCAGTTTACTCCAAGGTTTTCAGGTAATAATGGGGTTTCCCTGACTCTTGGTCTTCCCCACTGTGACACGTTGTCAGGAAGCCATCAAACTTTTCTCCCAAACCAGAACATTCAATTGGGAAGAAGACTGGAGATGCGTGACTCAAACGAGTATGCGGCCATAAACCCTTCCACTACTCACTCATCAGCTGCATTTGAGAACATGAACATGCAGAACCCAAAGAGGTTTTCTGCTCAATTGTTACCAGACTTTGTCACCTAA 2076 0.5072 MATYFHGNPEIQPPDGLQTLVLMNPGYIHYPDTPPPHPSNFVFLNSIAAGNSSLTPQNLHHVPPNHTQQFVGVPLPTVTAASSSQDLGQQHSVHPHQDGSTMHGFVPRMQCNLWNQIDPNATARETPRAQQQGLSLSLSSQQAGMGSFRVDRDVASQGQAPAISGEDVPGSGGSPSSVSGVTNVNGVTGIQSLLLSSKYLKAAQELLDEAVNVNSGIKTELGKKSGGAHTKATGETSGKAAGADSGEGNAKHASELSAVERQEIQMKKAKLISMLDEVDPRYRQYHQQMQIVISSFEQVAGIGAARTYTALALQTISKKFRCLKDAISAQIGAANKSLGEEDCFGSKMEGSRLKYVDHHLRQQRALQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYVEEMKEQGQNGSEDKSSRSGEVPAIKTAAPRQKPATETNARSLNSNQDSPSNHNTSTVSVSKPLISSATGDSVRNQFGFSFMGSLELQGITQGSPKKPRNQEILHFPTMDVKPHEANNEQLTIKFGEERQGRDEYSFMGTQANFIGGFGQYPIEEIGRFEAEQFTPRFSGNNGVSLTLGLPHCDTLSGSHQTFLPNQNIQLGRRLEMRDSNEYAAINPSTTHSSAAFENMNMQNPKRFSAQLLPDFVT 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1001 691 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 99 462 - -
Acco06g1001 691 ProSiteProfiles 'Homeobox' domain profile. 374 437 IPR001356 GO:0003677
Acco06g1001 691 MobiDBLite consensus disorder prediction 447 502 - -
Acco06g1001 691 MobiDBLite consensus disorder prediction 219 256 - -
Acco06g1001 691 MobiDBLite consensus disorder prediction 123 180 - -
Acco06g1001 691 SUPERFAMILY Homeodomain-like 378 444 IPR009057 -
Acco06g1001 691 MobiDBLite consensus disorder prediction 123 146 - -
Acco06g1001 691 Pfam Homeobox KN domain 394 433 IPR008422 GO:0003677|GO:0006355
Acco06g1001 691 Gene3D - 373 451 - -
Acco06g1001 691 CDD homeodomain 377 438 IPR001356 GO:0003677
Acco06g1001 691 FunFam BEL1-like homeodomain protein 9 380 442 - -
Acco06g1001 691 SMART HOX_1 377 441 IPR001356 GO:0003677
Acco06g1001 691 SMART prehox3 188 329 IPR006563 -
Acco06g1001 691 MobiDBLite consensus disorder prediction 475 502 - -
Acco06g1001 691 Pfam Associated with HOX 194 328 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1001 Acco-ChrAcco06 6734530 6737035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1001 1 690 Homeobox Transcription Factor Family AT2G35940 49.141 5.54e-171 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Acco06g1001 POX 2.1e-49 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1298 02 9653329 9655620 Acco06g1001 06 6734530 6737035 CCT
Acco06g1001 06 6734530 6737035 Acco06g1001 06 6734530 6737035 ECH