Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0984 ATGTCCGGCGGCGTTGGAGCTTCAAACTGCCAGGCATCGCCACCACCTGAGACTTCTCAGAATCGGCCGCCACCGAAGCGTCACCTGGCCTTCGCATCGACTAAACCACCGTTTGTTCCTCCGGATGATTACCACAGCTTTTCGTCTCCCAACTCTAGAAGGGCCGCCGATCAAGAACCTGAAGCTGTTGTCGTTCGATCTCCGTACATGAAGCGGAAGAACATAGTGAATGACAACAAGGGAGAGTCCCAGGAATGGAGTAACAGCCCAGCTGCTAATGTAATGAGTAGTCCCCTCAAAACACCTGTGTCTGTAAAAGGTGGAAGGACATACAATAAGTCCAAGGTTGCCAAAGAAGGAAAATCTGGTCCTCAAACTCCCATCTCAAATGCTGGTTCCCCTTCTCTAACTCCTGCTGGCAACTGTCGTTATGATAGTTCCTTGGGTTTGTTGACTAAAAAGTTCATCAATTTGCTCAAGCATGCGGAGGATGGTGATCTTGACCTAAACAAAGCAGCTGAAACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACCAATGTTTTGGAAGGAATTGGTCTCATTGAGAAAAAGCTCAAAAATAGAATACATTGGAAGGGAATCAAATCTTCTGCATCTGGAGAGGTTGATGGTGATGTATCTATGCTAAAGGCCGATGTTGAAAAGCTTTCTTTGGAAGAGCAAAGATTAGATGATCAAATAAGGGGAATGCAAGAAAAGCTGAGGAATTTGAGCGAAGATGAAAAAAACCAGAAGTGGCTCTTTGTAACTGAAGAAGATATTAAGGGCCTACCCAGCTTGCAGAATGAAACTCTAATAGCAATTAAAGCCCCACATGGAACCACCTTGGAAGTCCCTGATCCTGAGGAAGCTGTTGACTATCCACAGAGGAGATACAGAATAATTCTTAGAAGCACAATGGGTCCCATTGATGTCTACCTTGTCAGCCAATTTGAGGAGAAATTTGAAGAGATGAATGGCGTTGAGCCCCCTGCAACCCTCCCACTTGCTTCAAGTTCCGGATCCAATGAACACCTACCGACAGAAATGACTCCTCTTGAACACAACGGAAAGGGTCTTGAATCTCAAACTCAACTGTCTTCTCATACATGCTCTGATTTAAATGCCTCACCAGAGTTCGGTGGGGGCATTATGAGAATTGTTCCTTCTGATGCTGATAATGATGCAGATTACTGGCTACTATCAGATGCTGACGTTAGCATTACAGATATGTGGAGAACAGATTCCAGTGTTGATTGGAATGGGGTGGACATGCTTCCCTCTGATTTTGGAATCATCTCAAGGCCACAAACTCCATCATCTGGGTTCGCTGATGGACCATCTACATTGGCCAACTCAACTCAGAGATTTAAGGATGTTACTGAAAATGTTGCTGCTCTGTGA 1428 0.4496 MSGGVGASNCQASPPPETSQNRPPPKRHLAFASTKPPFVPPDDYHSFSSPNSRRAADQEPEAVVVRSPYMKRKNIVNDNKGESQEWSNSPAANVMSSPLKTPVSVKGGRTYNKSKVAKEGKSGPQTPISNAGSPSLTPAGNCRYDSSLGLLTKKFINLLKHAEDGDLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIKSSASGEVDGDVSMLKADVEKLSLEEQRLDDQIRGMQEKLRNLSEDEKNQKWLFVTEEDIKGLPSLQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLVSQFEEKFEEMNGVEPPATLPLASSSGSNEHLPTEMTPLEHNGKGLESQTQLSSHTCSDLNASPEFGGGIMRIVPSDADNDADYWLLSDADVSITDMWRTDSSVDWNGVDMLPSDFGIISRPQTPSSGFADGPSTLANSTQRFKDVTENVAAL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0984 475 SMART E2F_TDP_2 143 208 IPR003316 GO:0005667|GO:0006355
Acco06g0984 475 SUPERFAMILY E2F-DP heterodimerization region 221 325 IPR037241 -
Acco06g0984 475 Coils Coil 221 255 - -
Acco06g0984 475 Gene3D - 137 210 IPR036388 -
Acco06g0984 475 MobiDBLite consensus disorder prediction 80 100 - -
Acco06g0984 475 CDD E2F_DD 224 325 IPR032198 GO:0046983
Acco06g0984 475 Pfam E2F/DP family winged-helix DNA-binding domain 145 208 IPR003316 GO:0005667|GO:0006355
Acco06g0984 475 PANTHER TRANSCRIPTION FACTOR E2F 81 425 IPR015633 GO:0000978|GO:0006357
Acco06g0984 475 MobiDBLite consensus disorder prediction 1 139 - -
Acco06g0984 475 MobiDBLite consensus disorder prediction 1 16 - -
Acco06g0984 475 FunFam E2F transcription factor 1 137 210 - -
Acco06g0984 475 Pfam E2F transcription factor CC-MB domain 224 324 IPR032198 GO:0046983
Acco06g0984 475 Gene3D - 215 325 - -
Acco06g0984 475 SUPERFAMILY "Winged helix" DNA-binding domain 143 206 IPR036390 -
Acco06g0984 475 MobiDBLite consensus disorder prediction 123 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0984 Acco-ChrAcco06 6558573 6563119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0984 23 464 E2F-DP Transcription Factor Family AT2G36010 58.422 8.53e-167 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Acco06g0984 E2F_CC-MB 3.4e-34 No_clan