Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0966 ATGTCCATAAATCACTACTCGCCTGATATTTCAGAGGCTACACTGTGGTGGACTGAGCAACATCGCTACCACCACCACCATCATCAAGGGTTCCTTATGCAACCAATACAAAACCCCTCTCCGGCTACCGCCTGGCCTTCCTATATCTGCCCTCCTCCTCCGCCAAACCGCTTCAAACTCAACCACGACGACGACGAAGACGAAGACGACGATAGTAATCAACTCCTACAGACCGGTCACGTGGAAAATGATGGGCCCACGTCGCAGGGAGGTTCGGGCGGGGAAGACGAGAAGGAAGGGATGTTCGAGAAGCCACTGACGCCGAGCGACGTGGGGAAGCTGAACAGGCTGGTGATTCCAAAGCAGCACGCCGAGAAGTACTTCCCGTTGGGCGGGGCGGGAGGGGGGGAGGCGGCGGCCGGAGAGAGCAAGGGGGTGTCGCTGAGTTTCGAGGACGAGGCGGGCAAGTGCTGGAGGTTCCGTTACTCTTACTGGAACAGCAGTCAGAGCTACGTGCTGACCAAAGGCTGGAGTCGTTACGTTAAGGACAAGCGTCTGGATGCTGGCGACGTCGTTTTCTTTCAGCGCCACCGCACCGACTCCAACCGCCTCTTCATCAACTGGAGGCGCCGCCGCCACTCTCCCTCCACCACCGCCCACTTTGCCAGAGCCACCACCACAGACGCCAACACCACCAATATCAATATCAATAATAACAATGTTGGTGTGGGTGTGGGGTGGACCAGAGGTTTCTATGCTGCACATCCTTATCCTTCGCATCACCATCATCATGATCAACCCTTGCCATACCAACCGGACTGTCTTTATGCAGGCGTAGGGTTGGAAGTAGAGCAGAAAAAAACGACGACGTCGCCGCCGGGGAACAACTCCAGCTCCAGGATACTAAGGCTGTTCGGTGTAAACATGGAATGCCAGCCCGACGAATCCGGATCCTCCGAACCCGAATACTCGTACATGTCATCGACGTCGTCGTCCCAGCAGGGTACTGCCACCCAGCACCATCACCTCTACGGCCTTTATAATAATCAATCTGCTTCTTATTATTCCAATCACTTGGTACGTCAACAACCACACTCCTAG 1101 0.5522 MSINHYSPDISEATLWWTEQHRYHHHHHQGFLMQPIQNPSPATAWPSYICPPPPPNRFKLNHDDDEDEDDDSNQLLQTGHVENDGPTSQGGSGGEDEKEGMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGAGGGEAAAGESKGVSLSFEDEAGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVFFQRHRTDSNRLFINWRRRRHSPSTTAHFARATTTDANTTNININNNNVGVGVGWTRGFYAAHPYPSHHHHHDQPLPYQPDCLYAGVGLEVEQKKTTTSPPGNNSSSRILRLFGVNMECQPDESGSSEPEYSYMSSTSSSQQGTATQHHHLYGLYNNQSASYYSNHLVRQQPHS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0966 366 CDD B3_DNA 101 202 IPR003340 GO:0003677
Acco06g0966 366 MobiDBLite consensus disorder prediction 311 338 - -
Acco06g0966 366 MobiDBLite consensus disorder prediction 43 109 - -
Acco06g0966 366 SUPERFAMILY DNA-binding pseudobarrel domain 101 211 IPR015300 -
Acco06g0966 366 Pfam B3 DNA binding domain 102 211 IPR003340 GO:0003677
Acco06g0966 366 SMART B3_2 102 212 IPR003340 GO:0003677
Acco06g0966 366 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 14 325 IPR044800 GO:0003700
Acco06g0966 366 Gene3D - 96 222 IPR015300 -
Acco06g0966 366 MobiDBLite consensus disorder prediction 312 338 - -
Acco06g0966 366 ProSiteProfiles B3 DNA-binding domain profile. 102 212 IPR003340 GO:0003677
Acco06g0966 366 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0966 Acco-ChrAcco06 6432681 6434266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0966 95 315 RAV Transcription Factor Family AT5G06250 51.316 8.89e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco06g0966 B3 1.6e-29 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1332 02 9949938 9951143 Acco06g0966 06 6432681 6434266 CCT
Acco06g0966 06 6432681 6434266 Acco06g0966 06 6432681 6434266 ECH