Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0947 ATGGCAAGGTGTAAATCGGATTATATCAGTAACCCTAGAAATCTTGATATAAAGCATATCGCGTCCATTCGCTCCGGACTTATCATATTGCGGAGGCAAATAGAGGGGAGACTGAGAGAAGCTAAGATGCAAATCTTCGTCAAAACCCTTACAGGGAAGACCATAACTCTCGAGGTCGAGAGTAGCGACACTATCGACAATGTTAAGGCTAAGATTCAAGACAAGGAAGGCATCCCACCGGATCAGCAGCGTTTGATTTTTGCTGGAAAGCAGCTTGAAGACGGTAGAACTTTAGCTGATTACAACATTCAGAAGGAATCAACGCTTCATCTTGTTCTGAGGCTCCGTGGTGGTATCATCGAGCCTTCTTTGATGGCTTTGGCTCGCAAATACAATCAAGACAAGATGATCTGCCGCAAATGCTATGCTCGTCTGCATCCAAGAGCTGTCAACTGCCGGAAAAAGAAGTGTGGTCACAGTAATCAGTTGAGGCCAAAGAAGAAGATCAAGTAA 513 0.4464 MARCKSDYISNPRNLDIKHIASIRSGLIILRRQIEGRLREAKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0947 170 ProSiteProfiles Ubiquitin domain profile. 43 118 IPR000626 GO:0005515
Acco06g0947 170 FunFam ubiquitin-60S ribosomal protein L40 121 170 - -
Acco06g0947 170 Pfam Ribosomal L40e family 120 169 IPR001975 GO:0003735|GO:0005840|GO:0006412
Acco06g0947 170 CDD Ubl_ubiquitin 43 118 - -
Acco06g0947 170 SMART Ribosomal_L40e_3 119 170 IPR001975 GO:0003735|GO:0005840|GO:0006412
Acco06g0947 170 SMART ubq_7 43 114 IPR000626 GO:0005515
Acco06g0947 170 SUPERFAMILY Zn-binding ribosomal proteins 118 169 IPR011332 GO:0006412
Acco06g0947 170 Gene3D - 122 170 IPR038587 -
Acco06g0947 170 PANTHER UBIQUITIN 43 129 - -
Acco06g0947 170 ProSitePatterns Ubiquitin domain signature. 69 94 IPR019954 -
Acco06g0947 170 FunFam Ubiquitin-60S ribosomal L40 fusion 43 120 - -
Acco06g0947 170 SUPERFAMILY Ubiquitin-like 41 118 IPR029071 -
Acco06g0947 170 Pfam Ubiquitin family 45 116 IPR000626 GO:0005515
Acco06g0947 170 Gene3D - 37 121 - -
Acco06g0947 170 PRINTS Ubiquitin signature 53 73 IPR019956 -
Acco06g0947 170 PRINTS Ubiquitin signature 95 116 IPR019956 -
Acco06g0947 170 PRINTS Ubiquitin signature 74 94 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0947 Acco-ChrAcco06 6316949 6318577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0947 43 170 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 99.219 3.58e-92 262