Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0888 ATGGAAGAAAAAGTTGTTAATGTTTTCGGGTCACCCGGAAACTCAGACGCCGGGCAGCCTCTGCAACCCGTCGGAGTCTCCGTGCCTCAAGTAACGAACATGACGATGAATATGAACTTGCAGAATAGTGGAGGCGCAACGGTCGGAGATGCAGCTACAATGACATCGCCTGCAAGTACTGGAGGAGGAGGACCAGGGAGTTTTGATTTGTTCGGAAAAAAGAAGAGAGGGAGGCCGAGAAAATATGATTCAGATGGGAAGCCGAGGGTGACGACGTCGTTTCCGGGTGCACCATCACAACAAGGCTTTTCTTTGTCCCCAACCTCACCTTCTGAATTCTCCTCCAAAAGGGGTCGAGGAAGACCACCGGGCTCTGGCAACTGGAAGCTCCTCGCATCTTTAGGTGAGTTGTTTGCAAACACGGCAGGTGGGGATTTCACACCTCATGTCGTCACTGTTCATACTGGAGAGGATGTTGCCGGAAAAATCCTGTCATTTGCCCAGAAAGGTACTAGAGGAGTTTGCGTTCTTTCCGCCAATGGAGCTATATCTAATGTCACTCTACGGCAGCCTGGTTCTTCTGGTGGCTTATTAACATACGAGGGTCGGTTCGAGATTTTGTCTCTGTCAGGGTCATTCACAGTGTCTGATAATGGGGGCCTAAAAAGTCGAAGTGGTGGATTGAGTGTTGCTCTTGCTGGCCCAGATGGTCGTGTGATAGGTGGTGGTGTTGCTGGTCTGTTGACTGCTGCCAGTCCAATCCAAATTGTGATGGGAAGCTTTATGCCGTATAGTCCCAAGGCACGGAAAAGAAAGCTACAACGTGAGAACACAGTGGCATCTCCAGTTTCTGGTGCAGATGCTGTGATGGCGGCAAGACCTATCTCACAGGCGAATCCTAGCAGTGGTGACAACTGTTTCACACCCATGGCCCAGCAGCGGCAGCTTCCAGAACAAAGCCACAGAGAATCAGACAACATTACAGGCAGTGGGCCCAACCCCAGACATCAATATATCTTTGCCTGGGGAATAGACGCTTGTATTATAGTTAAGTTAAAGGTGATGCGGAGGCTGACATGGTAA 1083 0.5014 MEEKVVNVFGSPGNSDAGQPLQPVGVSVPQVTNMTMNMNLQNSGGATVGDAATMTSPASTGGGGPGSFDLFGKKKRGRPRKYDSDGKPRVTTSFPGAPSQQGFSLSPTSPSEFSSKRGRGRPPGSGNWKLLASLGELFANTAGGDFTPHVVTVHTGEDVAGKILSFAQKGTRGVCVLSANGAISNVTLRQPGSSGGLLTYEGRFEILSLSGSFTVSDNGGLKSRSGGLSVALAGPDGRVIGGGVAGLLTAASPIQIVMGSFMPYSPKARKRKLQRENTVASPVSGADAVMAARPISQANPSSGDNCFTPMAQQRQLPEQSHRESDNITGSGPNPRHQYIFAWGIDACIIVKLKVMRRLTW 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0888 360 Pfam AT hook motif 73 84 IPR017956 GO:0003677
Acco06g0888 360 Pfam AT hook motif 116 125 IPR017956 GO:0003677
Acco06g0888 360 SUPERFAMILY AF0104/ALDC/Ptd012-like 145 266 - -
Acco06g0888 360 MobiDBLite consensus disorder prediction 38 126 - -
Acco06g0888 360 MobiDBLite consensus disorder prediction 38 62 - -
Acco06g0888 360 MobiDBLite consensus disorder prediction 297 331 - -
Acco06g0888 360 MobiDBLite consensus disorder prediction 71 87 - -
Acco06g0888 360 Pfam Plants and Prokaryotes Conserved (PCC) domain 148 261 IPR005175 -
Acco06g0888 360 CDD DUF296 147 261 IPR005175 -
Acco06g0888 360 Gene3D - 148 279 - -
Acco06g0888 360 SMART AT_hook_2 73 85 IPR017956 GO:0003677
Acco06g0888 360 SMART AT_hook_2 116 128 IPR017956 GO:0003677
Acco06g0888 360 ProSiteProfiles PPC domain profile profile. 143 286 IPR005175 -
Acco06g0888 360 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 45 320 IPR039605 GO:0003680
Acco06g0888 360 MobiDBLite consensus disorder prediction 1 25 - -
Acco06g0888 360 MobiDBLite consensus disorder prediction 93 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0888 Acco-ChrAcco06 5913558 5916275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0888 73 286 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 53.478 2.28e-66 212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g0888 06 5913558 5916275 Acco06g0888 06 5913558 5916275 ECH