Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0878 ATGGAATGGAATGGAAGCATCAGAACCTTTGTTCCTCGAGCTGAGTCTTCCTTAAGTTTCCTCTACAACTATAACTGCAGCCCATATCCAGGAATGGAAGTGAAACATGCTGCAGCATCACAAGGGTTGATTCCGGATATGGAGAAAATAAAGTATGGGAACCAGATGGAGAAGAAGAAGCGACTGACGAGCGAGCAGCTTGAGTCACTGGAGAGGAGCTTCCAGGAGGAAATAAAGTTGGACCCTGACAGGAAGATGAAGCTCTCAAGGGAATTAGGGCTGCAGCCTCGCCAGATTGCTGTATGGTTTCAAAATAGGCGTGCTAGGTGGAAGGCCAAGCAGCTGGAGAACTTGTATGATGCCCTCAAACAAGAATTTGATGCTATCTCTGAGGAAAAACAGAGGCTTCAAGAAGAGGTTGTGAAGTTGAAGGCAATACTAAGAGAGCAAGCTTCAAAGACACAAGTTTCTGCAGGTTACACAGAAGTTTCTGGGGAAGAAACAGTGGAAAGCACGTCAGAGGCAGCACTGCGAGGCCCTAACAAGCAGGCACGGGGAATGACGAGCCATCATCATCAGCATCAGCAGAATGTTGCAGAAGCCAATTGTTCTTTCACTGTAGAGGATTATACCACTGTTTCACTGCCCTACTGGTCCGCTCTTGTGCCTTATTATCCATAA 681 0.4684 MEWNGSIRTFVPRAESSLSFLYNYNCSPYPGMEVKHAAASQGLIPDMEKIKYGNQMEKKKRLTSEQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLENLYDALKQEFDAISEEKQRLQEEVVKLKAILREQASKTQVSAGYTEVSGEETVESTSEAALRGPNKQARGMTSHHHQHQQNVAEANCSFTVEDYTTVSLPYWSALVPYYP 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0878 226 Coils Coil 53 73 - -
Acco06g0878 226 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
Acco06g0878 226 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Acco06g0878 226 FunFam Putative homeobox-leucine zipper protein ATHB-51 55 118 - -
Acco06g0878 226 SMART HOX_1 56 117 IPR001356 GO:0003677
Acco06g0878 226 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Acco06g0878 226 Coils Coil 105 153 - -
Acco06g0878 226 Pfam Homeodomain 58 111 IPR001356 GO:0003677
Acco06g0878 226 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 52 189 IPR045224 GO:0003700
Acco06g0878 226 SUPERFAMILY Homeodomain-like 46 115 IPR009057 -
Acco06g0878 226 CDD homeodomain 58 114 IPR001356 GO:0003677
Acco06g0878 226 Pfam Homeobox associated leucine zipper 113 147 IPR003106 GO:0006355|GO:0043565
Acco06g0878 226 MobiDBLite consensus disorder prediction 169 193 - -
Acco06g0878 226 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Acco06g0878 226 Gene3D - 51 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0878 Acco-ChrAcco06 5820187 5821596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0878 1 143 Homeobox Transcription Factor Family AT5G03790 55.556 3.01e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco06g0878 Homeodomain 3.3e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g0878 06 5820187 5821596 Acco02g1439 02 10863082 10863917 CCT
Acco06g0878 06 5820187 5821596 Acco06g0878 06 5820187 5821596 ECH