Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0869 ATGGGGGTTCCTCAGACGGTCGCCGCCGCACAGGCTTCGCTTTATGTTGGGGACCTCCACCCTGACGTCAGCGATCGACAGCTGCGCGAAGTGTTCTCGGAGTTTAATAGCACTTCTGTCCTGATCTGTAGAGACTCCTCTACCGGCAGGTCACTCTGTTATGGCTATGTCAACTTCGCCTCTTCCCAAGATGCTACTCGTGCTCTTGAGGTGAAGAATCATTCTAAACTGAACGGAAAAATGATAAGGGTTATGTGGTCACATCGTCACCCCGAAGCAAGAAAAAGCGGCAAAGCAAACGTATTTGTTAAGAACTTAGCTGAACCCATAGATAATGCGGAATTATACGAGCTGTTTCAAAACTTCGGGAAAATTTTGTCCAGCAAAGTTGCCATCTCTGAAGATGGGAAGAGCAAAGGGCATGGCTTCGTTCAATTTGAGTCAGAGGACTCTGCAAATGCTGCCATTGAAAAATTGAATGGCTCCACTGTTAGAGATAAACAAATATATGTCGGTAAGTTTGTCAAAAAAAGTGAACGCGTCTTGCCTGGTCCTGATCCCGAGTTCACAAATTTGTTCATGAAAAATTTGGACCCAGAGATTACAGAAGAGCTTCTGCGGGAAAAGTTCGCTCTTTTTGGCAACATTGTTAATTTGGCTATTGCTAAGGACTACAATGGAGTATCAAAGGGTTTTGGCTTTGTAAACTATGATAATCCAGATGATGCTAAACGGGCAATGGAAACCATGCATGGATCACGACTGGGTTCGACGATTATGTATGTAGCCAGAGCACAAAAGAAGGCTGAGCGTGAAAAACTCTTGCGCCGTCAGTTTGAGGAGAAACGTAAGGAACAGATCTTCAAATATGAGGGATCAAACATTTACGTGAAAAACATTGACGATGACGTCAATGACGAAGAGCTAAGAGATTGTTTTAGCTCATGCGGCTCGGTAACATCTGCCAAAGTTATGCGAGACGGCAAAGGAATAAGCAAGGGGTTTGGTTTTGTCTGTTTCTCCACTCCCGAGGAGGCCAATAAAGCTGTGAACAATTTCCATGGATCCATGCTTCATGGTAAACCACTATATGTTGCTATTGCTCAGAGGAAGGAAGATAGGCTAGCACGACTAAAGGTCCAGCATTCACAGGGAATAGCAGGACTAGCTGGACCTTCAACCGCTGTAATACATGGTGGATATCCTCCTTACTACTACGCTGCTACTGATGTTGTTTCACAGCTGCCACATCGAACTGGGCTAGTATATGAATCGCTGGGACTTGGGCCTGCAGGATGGAGGCTTAACAGCTTTGCACCTCCTATTTCACCAGTTCCGCAACCTCTAGTTTCTGTTTCCACTCAGGATGAATTGGGACGACAGCCTTCTCAATCAATGGCTTCATCAAAAGAATCAGTTATTACTCAGCAGACTAACTATGCTGGGAGTCAAGAATTGAAAATGCTCCATTTCATGCTTGGTGCTGCTACTCCTGAGCGGCAAAAGCAACTCCTCGGCGAGTATATTTACCCACTGGTTCAGAAACTCAGGATTACTGGGATGCTCTTGGAGATGGAAATTGGAGATTTGCTGCTTCTCCTGGAATCTCCAAGGTCTCTTTTTGCTAAGGTGGAGGAAGCTGTGCATGTGCTTAACAACTCCAAGACTGGATTGTCGGCCCAGGATGCACTCCATCCACGTTACTTTTCAGCTGACGTTGCTGTGAACTGA 1731 0.4552 MGVPQTVAAAQASLYVGDLHPDVSDRQLREVFSEFNSTSVLICRDSSTGRSLCYGYVNFASSQDATRALEVKNHSKLNGKMIRVMWSHRHPEARKSGKANVFVKNLAEPIDNAELYELFQNFGKILSSKVAISEDGKSKGHGFVQFESEDSANAAIEKLNGSTVRDKQIYVGKFVKKSERVLPGPDPEFTNLFMKNLDPEITEELLREKFALFGNIVNLAIAKDYNGVSKGFGFVNYDNPDDAKRAMETMHGSRLGSTIMYVARAQKKAEREKLLRRQFEEKRKEQIFKYEGSNIYVKNIDDDVNDEELRDCFSSCGSVTSAKVMRDGKGISKGFGFVCFSTPEEANKAVNNFHGSMLHGKPLYVAIAQRKEDRLARLKVQHSQGIAGLAGPSTAVIHGGYPPYYYAATDVVSQLPHRTGLVYESLGLGPAGWRLNSFAPPISPVPQPLVSVSTQDELGRQPSQSMASSKESVITQQTNYAGSQELKMLHFMLGAATPERQKQLLGEYIYPLVQKLRITGMLLEMEIGDLLLLLESPRSLFAKVEEAVHVLNNSKTGLSAQDALHPRYFSADVAVN 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0869 576 SUPERFAMILY PABC (PABP) domain 489 562 IPR036053 GO:0003723
Acco06g0869 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 82 IPR000504 GO:0003723
Acco06g0869 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 169 IPR000504 GO:0003723
Acco06g0869 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 258 IPR000504 GO:0003723
Acco06g0869 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 363 IPR000504 GO:0003723
Acco06g0869 576 SMART rrm2_1 294 366 IPR003954 GO:0003676
Acco06g0869 576 SMART rrm2_1 100 172 IPR003954 GO:0003676
Acco06g0869 576 SMART rrm2_1 13 85 IPR003954 GO:0003676
Acco06g0869 576 PANTHER RNA BINDING PROTEIN 12 71 - -
Acco06g0869 576 FunFam Polyadenylate-binding protein 93 180 - -
Acco06g0869 576 SUPERFAMILY RNA-binding domain, RBD 12 95 IPR035979 GO:0003676
Acco06g0869 576 Gene3D - 482 556 - -
Acco06g0869 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 176 IPR000504 GO:0003723
Acco06g0869 576 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 485 556 IPR002004 GO:0003723
Acco06g0869 576 FunFam Polyadenylate-binding protein 181 275 - -
Acco06g0869 576 SMART rrm1_1 13 85 IPR000504 GO:0003723
Acco06g0869 576 SMART rrm1_1 294 366 IPR000504 GO:0003723
Acco06g0869 576 SMART rrm1_1 191 263 IPR000504 GO:0003723
Acco06g0869 576 SMART rrm1_1 100 172 IPR000504 GO:0003723
Acco06g0869 576 FunFam Polyadenylate-binding protein 276 384 - -
Acco06g0869 576 Coils Coil 262 282 - -
Acco06g0869 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 370 IPR000504 GO:0003723
Acco06g0869 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 267 IPR000504 GO:0003723
Acco06g0869 576 Gene3D - 175 270 IPR012677 -
Acco06g0869 576 Gene3D - 271 377 IPR012677 -
Acco06g0869 576 SMART poly_2 497 554 IPR002004 GO:0003723
Acco06g0869 576 CDD RRM4_I_PABPs 292 370 - -
Acco06g0869 576 Gene3D - 100 172 IPR012677 -
Acco06g0869 576 Gene3D - 4 99 IPR012677 -
Acco06g0869 576 Pfam Poly-adenylate binding protein, unique domain 493 551 IPR002004 GO:0003723
Acco06g0869 576 SUPERFAMILY RNA-binding domain, RBD 290 384 IPR035979 GO:0003676
Acco06g0869 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 89 IPR000504 GO:0003723
Acco06g0869 576 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 384 IPR006515 GO:0003723
Acco06g0869 576 SUPERFAMILY RNA-binding domain, RBD 100 271 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0869 Acco-ChrAcco06 5759299 5763469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0869 12 574 Eukaryotic Initiation Factors Gene Family AT2G36660 50.842 0.0 548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1446 02 10941536 10946104 Acco06g0869 06 5759299 5763469 CCT
Acco06g0869 06 5759299 5763469 Acco06g0869 06 5759299 5763469 ECH