Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0867 ATGGCGGGATCAGCATCCGGTGACCCCTCGAACACCACTCCGCCTCCGGAGAGCAAACCGGCGGTCACGGAGCATAAAAGTTGGGCCGATGAAGCTGAGGAAGAAGTTCCAGAAGAAACAAATGACGCCCCCAGTTCATCATCAGTGTCCTCGCTTAACGTTGACGCATTAGCCATCGACGAGAATAAGAAGACTGCTACTAAGTTCTTGGATGAACCGGAGGACTCCAACATTCAAGCGGTTACTTCTGGTGATACTCCTTACACCTCAGCGAGCACCTTTGAAGATTTGAATCTCTCTCCAGATCTGCTAAAAGGATTGTATGTTGAGATGAAATTTCAGAAGCCTAGCAAAATTCAAGCCATCAGTTTGCCAATGATATTGAGCCCTCCTCATAAGGATCTGATTGCACAGGCACATAACGGTTCAGGCAAGACAACATGTTTTGTGCTTGGGATGCTAAGTCGCGTTGACCCCAACCTTAAGGCTCCTCAAGCTCTTTGCATTTGTCCAACTAGGGAATTAGCTATTCAGAATACCGAAGTTCTTCGAAAGATGGGGAAATACACTGGCATTATTTCAGAATGTGCCATACCAGCAGACAGCAGAGATTCTATTCCTATAGCAAAACGGGCACCGATTATGGCACAAGTAGTAATAGGGACTCCTGGAACAATTAAGAAGTGGATAACACATAAGAAACTGAGTGCAGTCAGATTAAACATTCTTGTCTTTGATGAGGCTGATCAAATGCTTGCAGAGGATGGTTTTAAAGATGATTCTTTGAGGATAATGAAAGATATAGAAAGAGTCAATGCTAACTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGAAATTGTCAAGAATTTTGTTTCAAGGACAGTTAAGAAGGATCACAATCAACTTTTTGTAAAGAAAGAAGAGCTATCTTTAGAGGCAGTGAAGCAATTCAGGGTGAATTGTCTTGATGAACTCACCAAGGTTGAAGTGATCAGAGATTACATATTTGAAATAGGAGAGAATGTGGGCCAGACTATCATATTTGTGCGCACAAGAAATAGTGCTAGCATGTTGCACAAATCACTTGCTGAATTGGGCTACGAGGTCACTTCTATTCAAGGCGCTCTTCAGCATGAGGAAAGAGATAAGATTGTCAAGGAGTTCAGAGATGGTCTGACCCAAGTGCTGATATCAACTGATGTTCTTGCCCGAGGCTTTGATCAACAACAGGTTAATTTGGTTATTAATTATGATCTTCCAGTGAAACATAGTGTGGGGTATGCTCGGGAACAGGAGCCCGATTACGAGGTGTATTTGCACAGGGTTGGGAGGGCTGGACGTTTTGGGCGCAAGGGGGCTGTATTTAACCTCATATGTGATGAAAGGGATGCAAATCTCATGGCGAAGATTGAGCAGCACTTTGGCACCCATGTAACTGAGGTCCGAGCTAATAGCGTTGAAGACTATAAAGGTGCTCTTAGGGAGGCTGGTTTATTGCAGTGA 1506 0.4369 MAGSASGDPSNTTPPPESKPAVTEHKSWADEAEEEVPEETNDAPSSSSVSSLNVDALAIDENKKTATKFLDEPEDSNIQAVTSGDTPYTSASTFEDLNLSPDLLKGLYVEMKFQKPSKIQAISLPMILSPPHKDLIAQAHNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNTEVLRKMGKYTGIISECAIPADSRDSIPIAKRAPIMAQVVIGTPGTIKKWITHKKLSAVRLNILVFDEADQMLAEDGFKDDSLRIMKDIERVNANCQVLLFSATFNEIVKNFVSRTVKKDHNQLFVKKEELSLEAVKQFRVNCLDELTKVEVIRDYIFEIGENVGQTIIFVRTRNSASMLHKSLAELGYEVTSIQGALQHEERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHSVGYAREQEPDYEVYLHRVGRAGRFGRKGAVFNLICDERDANLMAKIEQHFGTHVTEVRANSVEDYKGALREAGLLQ 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0867 501 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 92 121 IPR014014 GO:0003724
Acco06g0867 501 Pfam Helicase conserved C-terminal domain 332 450 IPR001650 -
Acco06g0867 501 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 60 468 - -
Acco06g0867 501 Pfam DEAD/DEAH box helicase 118 290 IPR011545 GO:0003676|GO:0005524
Acco06g0867 501 SMART ultradead3 112 318 IPR014001 -
Acco06g0867 501 MobiDBLite consensus disorder prediction 1 53 - -
Acco06g0867 501 Gene3D - 312 494 IPR027417 -
Acco06g0867 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 467 IPR027417 -
Acco06g0867 501 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 331 491 IPR001650 -
Acco06g0867 501 SMART helicmild6 357 450 IPR001650 -
Acco06g0867 501 Gene3D - 70 309 IPR027417 -
Acco06g0867 501 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 126 302 IPR014001 -
Acco06g0867 501 CDD SF2_C_DEAD 315 459 - -
Acco06g0867 501 CDD DEADc_DDX19_DDX25 99 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0867 Acco-ChrAcco06 5737895 5741324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0867 85 485 Eukaryotic Initiation Factors Gene Family AT1G72730 37.073 9.12e-74 237