Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0859 ATGCTATTCCTCTTCAATTTCAGCTTTCATGGTCTCCACCTCTTATCCGTAGGCGCTGATTCGCGCTCTGTGTTCGAAGCGGCCATGAAGCAAGACTTCGAATCACTGTCTGTTTCGGAAGGCCAATCTCATGATGCATTCGTCACAAGTTCGGCTTCGGAAACTCAATCTGGTTCCCAGACGATGCCCAACGCTCAGGTACCTGAGCATGATAATTCTAGGATAGTTAGAGGTGCGGTTAATGGTTATATTGTTTACACTCGACAAAAGAAGGATCGTCGTTTGTGTGATGGGTCCTCTGAGAATGAAAAGCTTAAGAGGCTAAAAACTTCTGTAGAACAGCAAGCAAATGTACCAATTCCAGGGTCGGAAGTTGGAGGCGGTGTAGAAATACACAATGTAGAACAAAGAATAGAAATTGGAGTCAGTTGTAATATGGAGAAGTCTAAATGCTACAATGAGCTTGAGAACAAGCCCGCACAAAATCGTGCTGGGGAACGTGGCTTCCATGATGTTCCTGTAGTGATTTCTAACGGTGACGGTGTACAGAAAGATGTTGTAGTAAAGACATTGAAGTGGTATTCTCGATCAGCTTTGAAAACAAAGGTTCGCTCTTCTGATAAGACGGCAAGTCTTTCAGAATCTTCCCAGACTGATAATTCCAAATCAGATGGGAAGGTAAACGGTGGCCCCAGCGCATTAACAGCCCCAAGAAACAAGTTGGAATTGAAGATGTCGAAAAAGATTGTGCTCAGCAAGAAGCCTATGACCGTCAAGGAGCTCTTCGATACCGGTCTACTGGATGGGGTTCCTGTAGTTTACATGGGCGGAAAGAAGGCTTCGGGACAGCGAGGCATTATCAAAGATGGGGGAATATTGTGTTCTTGCTGTCTGTGCAATGGACGCAGGGTCATTCCACCTTCCCAATTTGAGATTCATGCATGCAAAGCGTATAAGCGAGCAGCACAATACATTTGCCTGGAAAATGGGAAGAGCCTGCTTGAGCTATTGAGAGCTTGCAGAGGAGCTCCATTACATACTCTGGAGGCGACAATTCAAAACGTTGTTTGTTCTCCACCCGATGAAAAGTATTTCACATGTAAAATGTGCAAGGTATGTTTCCCTCCTTCCTGTGTGGAAAGAGTTGGGTCTATATGCAGTTCTTGCAAGGAGTCCAAGGATTCTCAAGAAAGTTCTGTCGATAAAGTGGGCAAAAGAGTCAGGTCCCCTAGACCGCTCTCTGTCACTGAGCAATCTGATACTTCTGAGAAGTGTATCTCTTCTAAGATTAAGAGACACAGGAAGAAAAGAACAAAGTCACCAAAATGGGTTAGCCGTGCAAAGTCTTCCAAGAATTCTTCAATGTCCATCCTTTCACGAAAGAAGAGTCTTTGGAGGGTGAAAAAAAAGTCCTCAAAATTGTCAGTAAAATTGAAGACTGCAAGAACTACTTCAAATTCAATGCATTTATCTTCACCAAACAAGAGTCACTGGAGGATCACTAAAAAGCACCAGCAGTTGCATAAGTTGGTCTTTGAGGAAGGTGGATTGCCTGATGGAGCTGAAGTAGCTTATTATGCACGTGGACAGAAACTGCTTGAGGGATACAAAAAGGGCTTTGGAATAATGTGTCGATGCTGCAACTCTGAGGTCAGCCCTTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCCCGCAAGAAACCTTATGCATACATCTACACATCAAATGGGGTGTCTCTTCATGAGCTGGCTATATCTCTCTCAAAAGATCGCAAATACTCTGCCAAGGATAATGATGATTTATGCATTATTTGTTGGGATGGCGGAGATCTGTTGCTTTGTGATGGATGCCCAAGGGCTTTTCATAAAGAATGTGCATCTCTGTCGAGTATTCCGCGTGGTAATTGGTACTGTAAGTTTTGTCAAAACATGTTCCAAAGAGAAAGGTTTGTGGTGCACAGCGCCGATGCTGTGGCGGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAGCAGATAACCAAGAGATGTGTGCGCATTGTTGAAGATGTTGATGCTGAACTCAATGGATGTGCTTTATGCAGAGGTTGTGACTTCAGCAGATCAGGATTTGGTCCACGAACAATAATAATCTGTGATCAGTGTGATAAAGAATTTCATGTTGGCTGCTTGAGGGATCATAAAATGTCATTTTTGAAGGAATTGCCAGAAGGGGATTGGTTTTGTTGCCATGATTGCTCAACCATACATTCTACTTTTCAGAACCTCCTGGTTAGGGGGGCTGAGAAACTTTCAGAACCTCTCCTGAATGTTATAAAGAAGAAGCAAGAGGAAAAAGGTTTAGAATCCCTCAGTGATATTGATGTGAAATGGAGGCTTCTTAAGGGCAAAATTGCTTCTCCTGAAACTAGGCCATTTCTTTTGCAGGCTATCTCAATATTTCATGAATGCTTTGATCCTATAGTTGATTCAATTACTGGACGCAATCTTATCACGGCCATGATATATGGAAGGACTGTGCGGAGACAAGAGTTTGGAGCAATGCATTGTGCCATATTAATGGTCAATTCAACTGTGGTATCTGCTGCTTTGCTTCGAATTTTTGGCAGTGATCTTGCAGAACTCCCCCTAGTTGCAACTCGTAGTGTTAACCACGGAAAGGGGTACTTTCAAATACTATACTCCTGCATTGAGAAATTGCTGGCTTCCTTAAACGTGAAGAACCTTGTGTTGCCAGCTACCGCCACTGCAGAGTCCATTTGGATTGAGAAATTTGGGTTCATAAAGATGACACCAGATGAGCTTAGCAACTACAGAAAGAGCTATCAGCAGATGGTGATATTTCAAGGGACATCCATGCTTCATAAAACTCTCACTCATTGTCCAGATATCAAAAGTTCAACATGA 2904 0.4335 MLFLFNFSFHGLHLLSVGADSRSVFEAAMKQDFESLSVSEGQSHDAFVTSSASETQSGSQTMPNAQVPEHDNSRIVRGAVNGYIVYTRQKKDRRLCDGSSENEKLKRLKTSVEQQANVPIPGSEVGGGVEIHNVEQRIEIGVSCNMEKSKCYNELENKPAQNRAGERGFHDVPVVISNGDGVQKDVVVKTLKWYSRSALKTKVRSSDKTASLSESSQTDNSKSDGKVNGGPSALTAPRNKLELKMSKKIVLSKKPMTVKELFDTGLLDGVPVVYMGGKKASGQRGIIKDGGILCSCCLCNGRRVIPPSQFEIHACKAYKRAAQYICLENGKSLLELLRACRGAPLHTLEATIQNVVCSPPDEKYFTCKMCKVCFPPSCVERVGSICSSCKESKDSQESSVDKVGKRVRSPRPLSVTEQSDTSEKCISSKIKRHRKKRTKSPKWVSRAKSSKNSSMSILSRKKSLWRVKKKSSKLSVKLKTARTTSNSMHLSSPNKSHWRITKKHQQLHKLVFEEGGLPDGAEVAYYARGQKLLEGYKKGFGIMCRCCNSEVSPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCIICWDGGDLLLCDGCPRAFHKECASLSSIPRGNWYCKFCQNMFQRERFVVHSADAVAAGRVEGVDPIEQITKRCVRIVEDVDAELNGCALCRGCDFSRSGFGPRTIIICDQCDKEFHVGCLRDHKMSFLKELPEGDWFCCHDCSTIHSTFQNLLVRGAEKLSEPLLNVIKKKQEEKGLESLSDIDVKWRLLKGKIASPETRPFLLQAISIFHECFDPIVDSITGRNLITAMIYGRTVRRQEFGAMHCAILMVNSTVVSAALLRIFGSDLAELPLVATRSVNHGKGYFQILYSCIEKLLASLNVKNLVLPATATAESIWIEKFGFIKMTPDELSNYRKSYQQMVIFQGTSMLHKTLTHCPDIKSST 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0859 967 MobiDBLite consensus disorder prediction 479 495 - -
Acco06g0859 967 ProSiteProfiles Zinc finger PHD-type profile. 599 644 IPR019787 -
Acco06g0859 967 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 587 672 IPR013083 -
Acco06g0859 967 MobiDBLite consensus disorder prediction 479 498 - -
Acco06g0859 967 MobiDBLite consensus disorder prediction 204 237 - -
Acco06g0859 967 SMART PHD_3 601 642 IPR001965 -
Acco06g0859 967 SMART PHD_3 689 746 IPR001965 -
Acco06g0859 967 MobiDBLite consensus disorder prediction 428 444 - -
Acco06g0859 967 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 588 665 - -
Acco06g0859 967 SUPERFAMILY FYVE/PHD zinc finger 588 643 IPR011011 -
Acco06g0859 967 MobiDBLite consensus disorder prediction 44 68 - -
Acco06g0859 967 CDD PHD1_AIRE 601 641 - -
Acco06g0859 967 ProSitePatterns Zinc finger PHD-type signature. 602 641 IPR019786 -
Acco06g0859 967 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 687 748 IPR013083 -
Acco06g0859 967 MobiDBLite consensus disorder prediction 44 71 - -
Acco06g0859 967 Pfam Tify domain binding domain 535 585 IPR032308 -
Acco06g0859 967 Pfam Tify domain binding domain 285 340 IPR032308 -
Acco06g0859 967 SUPERFAMILY FYVE/PHD zinc finger 683 745 IPR011011 -
Acco06g0859 967 PANTHER AUTOIMMUNE REGULATOR 22 956 - -
Acco06g0859 967 MobiDBLite consensus disorder prediction 204 228 - -
Acco06g0859 967 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 845 933 IPR016181 -
Acco06g0859 967 Gene3D - 797 956 - -
Acco06g0859 967 MobiDBLite consensus disorder prediction 399 453 - -
Acco06g0859 967 Pfam PHD-finger 602 643 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0859 Acco-ChrAcco06 5672150 5679829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0859 74 955 PHD Transcription Factor Family AT2G36720 46.154 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco06g0859 TDBD 5.6e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1462 02 11081386 11088925 Acco06g0859 06 5672150 5679829 CCT
Acco06g0859 06 5672150 5679829 Acco06g0859 06 5672150 5679829 ECH