Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0858 ATGGGATCCAGCAGAATCCTCCTTGCCTTTTTCACTTTTTCCGTTTCCATCATGATTTTTTGTTATTACAGTACGCCACCTTCCCTCACCACTATCTCTTCCATTAATCCTCAGAGTAGTTTCAAGCAACATGCGATCTTAAGCAGGATTATAAAGCTGAGTGGCGTTGAAGACTTTGTGTCTCTCATAACAAGACTTGCGAGGAGGCTTCACCACCGAATGAAGCACAAGGAAAAATGTGACAAGGCCACCTGGGATTCTGATCTTATTTTGGACTACAATGTGAGCCTTGTTTTGACGGTTAGTTTAAAGGGTTGTGGAAATTTTAGCAGCTTACAGCAAGCAGTGAACGCTGTTCCTGAATCAAGGCCTGATAAAACCCTCATCATCATTGATTCTGGCATATTCAGAGAGAAGGTCGTGGTGGAGGCAAACAAAACAAATTTGATATTGCAAGGTCAAGGGTATCTGAACACGATCATAGAATGGAATGGTACTGCCAATTCTACAGGAGGGACATTTAATAGTTATTCAGTTGGAGTCTTCGCTTCTAAGTTTATCGCTTACAACATTAGTTTTAAAAATACGGCTCCAGCACCATTACCTGGTACGACGGGGGCACAAGCGGTGGCGCTAAGAGTGAGTGGCGACGAAGCAGCATTCTACGGCTGTGGAATGTATGGTGCTCAAGACACACTCAATGATGATTGTGGAAGACATTACTTTAAAGAATGTTTCATTCAAGGATCCATTGATTTCATATTTGGTAATGCCAAATCTCTTTATCAGGATTGTACTATAAACACTATATCAACAGACGAAGGAACTACAATTACTGGGGCCATCACAGCTCAAGCGAGACAGACAGAAAATGAAGATACTGGGTTTTCATTTATGAACTGTAAGATCGATGGAAGAGGAAAAGTGTGGCTTGGAAGAGCATGGGGAGCTTATGCCACTGTGGTATTTTTGAAAACATACATGTCTGAAGTTGTAGCTCCTGAAGGATGGAACGATTGGTCTAATTCTACAAGAGACATGACTGTGTTTTTTGGGGAATATCATTGTTTTGGAGGTGGAGCCAACTACTCGTCTAGAGTCTCGTATGGAAAGCAGCTTAAAGACAACGAAGCTGCCCGTTTCATGAATGTTTCATATATTGATGGGAACGACTGGCTTCTCAATCACCCCAATTAA 1197 0.4185 MGSSRILLAFFTFSVSIMIFCYYSTPPSLTTISSINPQSSFKQHAILSRIIKLSGVEDFVSLITRLARRLHHRMKHKEKCDKATWDSDLILDYNVSLVLTVSLKGCGNFSSLQQAVNAVPESRPDKTLIIIDSGIFREKVVVEANKTNLILQGQGYLNTIIEWNGTANSTGGTFNSYSVGVFASKFIAYNISFKNTAPAPLPGTTGAQAVALRVSGDEAAFYGCGMYGAQDTLNDDCGRHYFKECFIQGSIDFIFGNAKSLYQDCTINTISTDEGTTITGAITAQARQTENEDTGFSFMNCKIDGRGKVWLGRAWGAYATVVFLKTYMSEVVAPEGWNDWSNSTRDMTVFFGEYHCFGGGANYSSRVSYGKQLKDNEAARFMNVSYIDGNDWLLNHPN 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0858 398 Pfam Pectinesterase 100 390 IPR000070 GO:0030599|GO:0042545
Acco06g0858 398 SUPERFAMILY Pectin lyase-like 96 393 IPR011050 -
Acco06g0858 398 Gene3D - 93 396 IPR012334 -
Acco06g0858 398 ProSitePatterns Pectinesterase signature 2. 247 256 IPR033131 -
Acco06g0858 398 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 92 393 - -
Acco06g0858 398 FunFam Pectinesterase 93 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0858 Acco-ChrAcco06 5666890 5669526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0858 91 393 Carbohydrate Esterase AT1G05310 52.941 3.40e-116 342