Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0851 ATGATGACCTTTCCTTTCACCACCCTATTGGCCTCCTCCTTCCTCTTTCTCGTGGCTGTTCCGCTTCCATGCGTACATGCAACTGTTCCACGCCAATGGAGGAAAGCTCACGCTACCTTCTACGAAGGAAGCTCCACATCATACGGAGGAGCATGTGGGTACGATGATATTGCACGACAGGGGTACGGTGATACAGCAGCGGTGAGCACGGCCATGTTCAAGGATGGACTAACGTGTGGAGCGTGTTACGAAATCCGATGTGTGGATTCTCCTCAATGGTGCAAGCCAGGCCAACCCGTTCTTCATGTCACCGCCACCAACCATTGCCCGGGCGATTCCGGTGATGGGTGGTGCAGTCCTCCAAAAAGGCATTTTGATTTAGCCAAACCTTCCTTCGCCAAGATCGCCACCGACTTTAAGGCCGGCGTCGTCCCCGTCGAGTACCGCAGGGTCCGGTGCAAGAAGAATGGAGGGATTAAAGTGAAGATGACAGGGAATCCGTACTACAATGCGGCATGGTTGTACAATGTGGGAGGAGCCGGCAACGTGGTGGCGGTGCAGGTAAAGAGTGGGAACTCGCCGGTGTGGAAGGAGATGAAGAGAGATTGGGGTCAGAAATGGGTGCTTAATGATAAGATAGAGGAAGGAGATTTGAGCTTCAGGATCCAAACAAGCGATGGCAAGGTCGTGATCTCCCCCTCTGTTTGCCCCAAAGGTTGGCAATATGGTCAAACCTTTGAAGCCCATCAGAACTTTGCTTAA 762 0.5262 MMTFPFTTLLASSFLFLVAVPLPCVHATVPRQWRKAHATFYEGSSTSYGGACGYDDIARQGYGDTAAVSTAMFKDGLTCGACYEIRCVDSPQWCKPGQPVLHVTATNHCPGDSGDGWCSPPKRHFDLAKPSFAKIATDFKAGVVPVEYRRVRCKKNGGIKVKMTGNPYYNAAWLYNVGGAGNVVAVQVKSGNSPVWKEMKRDWGQKWVLNDKIEEGDLSFRIQTSDGKVVISPSVCPKGWQYGQTFEAHQNFA 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0851 253 Pfam Lytic transglycolase 65 148 IPR009009 -
Acco06g0851 253 PANTHER EXPANSIN-A15 13 250 IPR002963 GO:0009664
Acco06g0851 253 SUPERFAMILY Barwin-like endoglucanases 32 176 IPR036908 -
Acco06g0851 253 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Acco06g0851 253 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Acco06g0851 253 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Acco06g0851 253 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Acco06g0851 253 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Acco06g0851 253 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Acco06g0851 253 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Acco06g0851 253 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Acco06g0851 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 248 IPR007117 -
Acco06g0851 253 Gene3D - 154 252 IPR036749 -
Acco06g0851 253 Gene3D - 23 153 IPR036908 -
Acco06g0851 253 Pfam Expansin C-terminal domain 159 237 IPR007117 -
Acco06g0851 253 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Acco06g0851 253 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Acco06g0851 253 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Acco06g0851 253 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Acco06g0851 253 SUPERFAMILY PHL pollen allergen 155 247 IPR036749 -
Acco06g0851 253 CDD DPBB_EXPA_N 32 153 - -
Acco06g0851 253 SMART dpbb_1 65 148 IPR007112 -
Acco06g0851 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 158 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0851 Acco-ChrAcco06 5610066 5611028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0851 33 250 Expansin Gene Family AT2G40610 49.115 9.04e-77 231