Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0847 ATGGAGGATATCATTCAAGAGCAAGTTGTTATGGTGGCGTGCAAGGATGAGGCACAAATCATGAAGGGCAAGCGTACCAAGCGTCATAGGGAACCCTCCCCACTGAGGCTGGCCATAGCCATGCCTTGTACAACAGCCGCCAGCAATGATGAATTAAGGGACAGCACGCCGTCGTCCGCGGCGGAAGAGGAGGACATGGCCAATTGTTTGATTCTTTTGGCTCACGGCGGCAAATCCTCCCACCCTACGGTGGGTGTCCCTAATAAGGATGGGGCATACCTTTACCAGTGCAAGACTTGTGACCGAGGCTTCCCTTCGTTCCGAGCGCTTGGCGGACACAGAGCCAGACACAAGAAGATGAAGACCAACCCAGAACATGGTTACGACGATTATTGTACCAGCACTGCTCTCTCCTTGCAATTATCAAGTAGCAGGCTTTCTTTGTATAGCGCTAATAAGTCATCGTCTAAAGTCCATGAGTGCTCTATTTGTGGGGCTGAGTTCTCCTCTGGGCAAGCCTTGGGGGGTCACATGAGAAGGCATAGAACTTTGATGAACGCCTCAGCAGCCACCGCCATTATTAGCAGCAGCCCTGAATCTCAAGACGTCAAGAAACCCAGAAACGTGTTCAAGTTGGACTTGAATCTTCCTGCTCCTGATGAAGTACTTTTATGGGTTAGTTAG 684 0.5058 MEDIIQEQVVMVACKDEAQIMKGKRTKRHREPSPLRLAIAMPCTTAASNDELRDSTPSSAAEEEDMANCLILLAHGGKSSHPTVGVPNKDGAYLYQCKTCDRGFPSFRALGGHRARHKKMKTNPEHGYDDYCTSTALSLQLSSSRLSLYSANKSSSKVHECSICGAEFSSGQALGGHMRRHRTLMNASAATAIISSSPESQDVKKPRNVFKLDLNLPAPDEVLLWVS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0847 227 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Acco06g0847 227 Gene3D Classic Zinc Finger 93 181 - -
Acco06g0847 227 ProSitePatterns Zinc finger C2H2 type domain signature. 161 181 IPR013087 -
Acco06g0847 227 PANTHER ZINC FINGER PROTEIN ZAT5 30 219 - -
Acco06g0847 227 SMART c2h2final6 95 117 IPR013087 -
Acco06g0847 227 SMART c2h2final6 159 181 IPR013087 -
Acco06g0847 227 Pfam C2H2-type zinc finger 158 182 - -
Acco06g0847 227 Pfam C2H2-type zinc finger 95 119 - -
Acco06g0847 227 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Acco06g0847 227 ProSiteProfiles Zinc finger C2H2 type domain profile. 159 181 IPR013087 -
Acco06g0847 227 SUPERFAMILY beta-beta-alpha zinc fingers 94 181 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0847 Acco-ChrAcco06 5579453 5580136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0847 20 221 C2H2 Transcription Factor Family AT5G03510 41.036 7.94e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco06g0847 zf-C2H2_6 8.1e-13 CL0361