Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0810 ATGGGCTACATTCTAAATCTACTCCCTAGAACAGTCTTTTTGGACAAATTAAGTATCCATGACGGTCCCGAGTGGCTCCAACACAAGATACGTTCATACACCAGAAAACTTGCCAACTTTCGCATTCCTGATGATGCTCTACTGACTCTTCAAGGTTGTTTTATAAAAAGTAGGGGGGAGTTAGCCGGTCATGCTAAGAGTTTTATTAACCATAGGATTTATACTCATAACGGTGGGGAATTAAATGTCTTTCCTCATATACAAACTCTTAGAGAATTTCCCAAGGAAGAACTCTCTGCAAAAGTTGTCTTGGTCAGATTTGATTCTAACATCTTCAACAAGCAGCATGAGCAACAGACTCAATCAGTTTCTAATGCAGTGCGAACAATTAAGTACTTGCATGAAGCTGGGGCAAAAGTAATTCTGACTAGTGATTGGGATACAGATTCAGAAGTTTCTCACACAGAATTTGTTGCTGATTTCTTGTCAGAAGTTCTTCAGATACAAATCGTTCCGCTGCAAAACCTATCATGTAATAAGCTATCAAAGCTCAAAGGCCCCAAGAAACTAGATATCCTTCTTGTTGAGAACCTATCTAAATTTAAAGAGGAAGTTGCCAATTGTTTGGAGTTTGCTAAAGAATTAACATCAGGAGTCGATATCTTTGTTAATGACTCCTTCTCTCACTCTCATAAAGTTCTAGCATCTACTGTTGGTGTGACTCGCTTCTGCTATGCCTGTATGGCTGGTTTTCACTTTGAGGAAAGCCTATATCTACTGGAGAATGTTACAGATGCCACCAAGAAACCCTATATAGGAGGCAGTGATTTCTTCAATAAAGCAACTGCTTTGCGATTTTTAACATCGAGATGCCAGGGGTTGGTGTTTGTTGGAATGATGTCATTTCAAATAATGCATGCCTTAGGAGTCTCAGTTCCTCTTGATCTGGTGGATCTTAATGCATGTAATGAAGCTCTACATATAGTTCAACTTGCTCAAGATAGAAATATGCAGATTCTGTACCCAAAAGACTTTTGGTGCAGGAATGAAAGCAATCCAAAGCAACTGCAAGCATTTCCTTCTCACAGCATTTTGGATGGTTGGGTGCCTGTGGACCTTGGACCTGCATCATTAGATGAAATAGGCTTCTTACTTGGAATATCTAAGAAAGTCATATGGATGGGTCCTGTGAGATTTGTTGGTTCAAGTAAGTACACAATTGGAGCTGCAAATTTGGCAAAAATGCTTGATCAACTTAGTAGGAACTGTGAAATAACTGTTGTTGGAAATATGGCATGCCAAGTCATGAGACAGGAGCTGAGTTCCTTGTCTTTTATAAATCTGGTTGATAATGCCTCAGTTGTATGGGAATTTCTCAAAGGAAGAAAGCTCCCTGGCGTTATGGCCTTAGACAGAGCATACCCGTTTGAGATCAACTGGAACGACTTGTATGCTGACCCAGCTCAACCTCTATTTGTTGATATAGGAAGTGGTAATGGGCTTTTTCTTCTAGAAATGGCTCAAAGGAGGAAAGATTTGAACTTCCTTGGTTTGGAGATTAATGAAAAGCTTGTGAAGCGCTGTTTGGAATCTGTTCATCACTTTGGCATCAGGAATGGGCACTTTATTGCAACTAATGCTACGTCAACATTTCGTTCAATTGTTTATAGATACCCAGGAGAATTGATTCTTGTTTCAATACAGTGTCCGAACCCTGACTTCAATAAGCCTGAGCATAGATGGAGGATGCTGCAGAGGTCTTTAATTGAAGCTGTAACAGATCTCCTTTCGCCTGGCGGCAAGGTGTTTCTGCAATCCGACGTAGAAGATGTCGCTATAAGAATGAAGGAACAGTTTTTGAGATATGGCAAGGGGAAGCTTCATATGGTGCATGATCAGGTGCAATGCAATGGCCGAAGTAGTTGGCTCATGGAAAATCCATTTGGGGTCAGGTCAGACTGGGAACGGCACGTTTTAGATCGTGGGGCCCCAATGTACCGCTTAATGTTTTCTAAATCAGTTCATCCGAGTGAAGCTAACTGATCTCCTACACCGTCCTTCACTTTCCGTCTTGCTTGTTGCCCTGCACAAACAAGACCTTCTTCTGCTAGTCGACGCATATCTTTCCCTTCTTTCACTATGTCTGATCAGGCTGGATCATCTGATACTAAGGGAACGAAGAAGGACTTTAGCACGGCGATTCTGGAGCGCAAAAAGGCGCCAAATCGGTTGGTTGTTGATGAGGCTATCAACGATGACAATTCTGTGGTCGCACTCCACCCGGCGACCTTAGAAAAACTACAGATGTTTGGCGGCGACACGATTTTGATCAAGGGAAAGAAAAGAAGAGATACAATCTGCATTGTCCTCGCTGATGACACGTGTGATGAACCGAGGATAAGAATGAATAAGGTTGTGAGAAGCAACCTGAGGGTCAGGCTCGGTGATGTTGTTTCTGTGCATCACTGTCCTGATGTTAAATATGGCAAGCGAGTCCACATTCTTCCTATTGATGACACTATCGAAGGGGTGACTGGAAGTCTCTTTGATGCATACCTAAAACCTTATTTTCTGGAGGCTTATCGCCCAGTGAGGAAGGGTGACTTATTCCTTGTCAGAGGGGGAATGAGAAGTGTGGAATTCAAGGTTATTGAAACCGACCCTTCAGAGTATTGTGTTGTTGCGCCAGACACTGAGGTCTTTTGTGAAGGGGAGCCTGTGAAGAGGGAAGATGAGGATCGGTTAGATGATGTTGGTTATGATGATGTTGGTGGTGTAAGAAAGCAGATGGCCCAGATTAGGGAATTGGTGGAATTGCCACTGAGGCATCCACAATTATTCAAGTCTATTGGTGTTAAGCCACCAAAAGGTATTTTGCTGTATGGGCCTCCTGGGTCTGGTAAGACTTTAATTGCCCGGGCAGTTGCAAATGAAACTGGTGCCTTCTTTTTCTGCATCAATGGACCTGAGATCATGTCAAAATTGGCTGGTGAGAGTGAAAGCAATCTGAGGAAGGCATTTGAGGAAGCTGAAAAGAATGCACCGTCTATCATCTTCATTGATGAGATAGATTCTATAGCTCCAAAGAGGGAGAAGACTCATGGAGAAGTTGAGAGGAGGATTGTATCCCAGCTGTTGACACTCATGGATGGGCTAAAAGCACGTGCACATGTAATTGTTATTGGAGCCACAAATCGTCCCAACAGCATTGACCCAGCTCTTAGGAGGTTTGGAAGGTTTGACCGGGAGATAGATATTGGTGTTCCTGATGAAGTTGGCCGTCTTGAAGTGCTACGTATCCACACAAAGAATATGAAGCTTGCTGAAGATGTTGATTTGGAAAAAATTTCAAAGAATACCCATGGCTATGTTGGTGCTGATCTTGCTGCTCTGTGCACTGAAGCTGCCCTTCAATGCATCAGAGAGAAAATGGACGTGATTGACTTGGAAGATGAAACAATTGATGCTGAGATACTGAACTCAATGGCTGTGACAAATGATCATTTCCAGACTGCTCTTGGATCAAGCAACCCTTCTGCTCTCCGTGAAACGGTTGTTGAAGTGCCCAATGTCAGCTGGGAAGATATTGGTGGCCTTGAGAATGTTAAGAGAGAGCTGCAAGAGACTGTTCAGTATCCCGTGGAACACCCTGAAAAATTCGAGAAGTTTGGAATGTCCCCATCAAAGGGGGTTCTTTTCTATGGGCCTCCTGGATGTGGCAAGACGCTTTTGGCTAAAGCTATTGCTAATGAATGCCAGGCAAACTTCATCAGCGTTAAGGGACCTGAGCTACTTACAATGTGGTTTGGAGAAAGTGAGGCTAATGTGCGGGAAATATTTGACAAGGCCCGTGGTTCTGCTCCATGTGTCTTGTTCTTTGATGAACTCGACTCAATTGCAACCCAGAGAGGTAGCAGTGTCGGAGATGCTGGGGGTGCTGCTGACAGGGTTTTGAATCAACTCCTTACAGAAATGGATGGCATGTCAGCCAAGAAAACTGTGTTCATCATCGGGGCCACCAATCGACCGGACATCATAGACCCTGCACTTCTGCGACCTGGTCGTCTAGACCAGTTGATTTATATCCCCCTACCAGATGAGGAATCCCGCTATCAGATATTTAAATCTTGCCTAAGAAAATCCCCCGTGGCAAAGGATGTTGATCTTGGAGCTCTTGCCAAGTATACTCAGGGCTTCAGTGGTGCTGATATTACTGAGATTTGCCAGCGTGCATGCAAGTATGCCATAAGAGAGAACATTGAAAAGGACATTGAAAGAGAACGGAGGAAAAGTGAGAATCCTGAGTTGATGGAGGAGGATGTGGAAGATGAGGTAGCAGAAATTAAGGCTGCTCATTTCGAGGAATCCATGAAGTATGCTCGAAGGAGTGTAAGTGATGCTGACATTCGCAAGTACCAGGCATTTGCCCAGACATTACAGCAATCCAGAGGATTCGGGACGGAGTTTAGGTTCCCAGATAGCACCTCTACCGGCGTCGCCACTGCCTCAGCTGACCCTTTTGCACCTGCTGGTGGTGCTGATGAGGATGATCTTTACAGTTAG 4563 0.439 MGYILNLLPRTVFLDKLSIHDGPEWLQHKIRSYTRKLANFRIPDDALLTLQGCFIKSRGELAGHAKSFINHRIYTHNGGELNVFPHIQTLREFPKEELSAKVVLVRFDSNIFNKQHEQQTQSVSNAVRTIKYLHEAGAKVILTSDWDTDSEVSHTEFVADFLSEVLQIQIVPLQNLSCNKLSKLKGPKKLDILLVENLSKFKEEVANCLEFAKELTSGVDIFVNDSFSHSHKVLASTVGVTRFCYACMAGFHFEESLYLLENVTDATKKPYIGGSDFFNKATALRFLTSRCQGLVFVGMMSFQIMHALGVSVPLDLVDLNACNEALHIVQLAQDRNMQILYPKDFWCRNESNPKQLQAFPSHSILDGWVPVDLGPASLDEIGFLLGISKKVIWMGPVRFVGSSKYTIGAANLAKMLDQLSRNCEITVVGNMACQVMRQELSSLSFINLVDNASVVWEFLKGRKLPGVMALDRAYPFEINWNDLYADPAQPLFVDIGSGNGLFLLEMAQRRKDLNFLGLEINEKLVKRCLESVHHFGIRNGHFIATNATSTFRSIVYRYPGELILVSIQCPNPDFNKPEHRWRMLQRSLIEAVTDLLSPGGKVFLQSDVEDVAIRMKEQFLRYGKGKLHMVHDQVQCNGRSSWLMENPFGVRSDWERHVLDRGAPMYRLMFSKSVHPSEANXSPTPSFTFRLACCPAQTRPSSASRRISFPSFTMSDQAGSSDTKGTKKDFSTAILERKKAPNRLVVDEAINDDNSVVALHPATLEKLQMFGGDTILIKGKKRRDTICIVLADDTCDEPRIRMNKVVRSNLRVRLGDVVSVHHCPDVKYGKRVHILPIDDTIEGVTGSLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPSEYCVVAPDTEVFCEGEPVKREDEDRLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKARAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEKISKNTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNDHFQTALGSSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLGALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRKSENPELMEEDVEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFPDSTSTGVATASADPFAPAGGADEDDLYS 1520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0810 1520 SMART CDC48_N_2 743 826 IPR003338 -
Acco06g0810 1520 Pfam Phosphoglycerate kinase 97 437 IPR001576 GO:0004618|GO:0006096
Acco06g0810 1520 MobiDBLite consensus disorder prediction 1486 1520 - -
Acco06g0810 1520 Gene3D - 1089 1180 - -
Acco06g0810 1520 Gene3D - 826 922 - -
Acco06g0810 1520 Gene3D - 85 260 IPR015824 GO:0004618|GO:0006096
Acco06g0810 1520 Gene3D - 265 470 IPR015824 GO:0004618|GO:0006096
Acco06g0810 1520 Pfam ATPase family associated with various cellular activities (AAA) 1231 1364 IPR003959 GO:0005524|GO:0016887
Acco06g0810 1520 Pfam ATPase family associated with various cellular activities (AAA) 958 1087 IPR003959 GO:0005524|GO:0016887
Acco06g0810 1520 PANTHER AAA-FAMILY ATPASE 1115 1482 - -
Acco06g0810 1520 Pfam Putative methyltransferase 489 623 IPR003358 GO:0006400|GO:0008176
Acco06g0810 1520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 917 1179 IPR027417 -
Acco06g0810 1520 CDD AdoMet_MTases 492 605 - -
Acco06g0810 1520 SMART AAA_5 954 1090 IPR003593 GO:0016887
Acco06g0810 1520 SMART AAA_5 1227 1366 IPR003593 GO:0016887
Acco06g0810 1520 CDD RecA-like_CDC48_r2-like 1202 1362 - -
Acco06g0810 1520 ProSitePatterns AAA-protein family signature. 1334 1352 IPR003960 GO:0005524|GO:0016887
Acco06g0810 1520 Gene3D - 1368 1476 - -
Acco06g0810 1520 FunFam Transitional endoplasmic reticulum ATPase 920 1087 - -
Acco06g0810 1520 Pfam Cell division protein 48 (CDC48), domain 2 845 908 IPR004201 -
Acco06g0810 1520 FunFam Transitional endoplasmic reticulum ATPase 1181 1364 - -
Acco06g0810 1520 FunFam Phosphoglycerate kinase 469 673 - -
Acco06g0810 1520 Gene3D - 923 1087 IPR027417 -
Acco06g0810 1520 Gene3D - 720 825 - -
Acco06g0810 1520 PRINTS Phosphoglycerate kinase family signature 390 415 IPR001576 GO:0004618|GO:0006096
Acco06g0810 1520 PRINTS Phosphoglycerate kinase family signature 218 240 IPR001576 GO:0004618|GO:0006096
Acco06g0810 1520 PRINTS Phosphoglycerate kinase family signature 97 113 IPR001576 GO:0004618|GO:0006096
Acco06g0810 1520 PRINTS Phosphoglycerate kinase family signature 190 205 IPR001576 GO:0004618|GO:0006096
Acco06g0810 1520 PRINTS Phosphoglycerate kinase family signature 249 271 IPR001576 GO:0004618|GO:0006096
Acco06g0810 1520 PRINTS Phosphoglycerate kinase family signature 448 465 IPR001576 GO:0004618|GO:0006096
Acco06g0810 1520 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 476 669 IPR029063 -
Acco06g0810 1520 Pfam AAA+ lid domain 1386 1427 IPR041569 -
Acco06g0810 1520 Pfam AAA+ lid domain 1110 1152 IPR041569 -
Acco06g0810 1520 Pfam Cell division protein 48 (CDC48), N-terminal domain 743 824 IPR003338 -
Acco06g0810 1520 Gene3D Vaccinia Virus protein VP39 471 678 IPR029063 -
Acco06g0810 1520 FunFam Cell division control 48 1089 1180 - -
Acco06g0810 1520 SUPERFAMILY Cdc48 domain 2-like 825 917 IPR029067 -
Acco06g0810 1520 NCBIfam CDC48 family AAA ATPase 744 1480 IPR005938 GO:0016787
Acco06g0810 1520 ProSitePatterns AAA-protein family signature. 1058 1076 IPR003960 GO:0005524|GO:0016887
Acco06g0810 1520 MobiDBLite consensus disorder prediction 1486 1502 - -
Acco06g0810 1520 ProSiteProfiles SAM-dependent methyltransferase TRMB-type domain profile. 451 672 IPR003358 GO:0006400|GO:0008176
Acco06g0810 1520 Gene3D - 1181 1364 IPR027417 -
Acco06g0810 1520 SUPERFAMILY ADC-like 740 823 IPR009010 -
Acco06g0810 1520 SUPERFAMILY Phosphoglycerate kinase 95 471 IPR036043 GO:0004618|GO:0006096
Acco06g0810 1520 FunFam Transitional endoplasmic reticulum ATPase 720 825 - -
Acco06g0810 1520 CDD RecA-like_CDC48_r1-like 922 1087 - -
Acco06g0810 1520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1189 1477 IPR027417 -
Acco06g0810 1520 FunFam Cell division control 48 826 922 - -
Acco06g0810 1520 SMART CDC48_2_2 843 909 IPR004201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0810 Acco-ChrAcco06 5327715 5339854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0810 913 1423 Calmodulin-binding Proteins AT3G56690 39.108 3.42e-122 407