Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco06g0797 | ATGAGTATTTCCGGTTGGGTTTTCAGCTCTACTCTTTGCCACTTGAAAATATCATGGGGTCGCTCGCCCCAAAAGGAGGGGAAAAAATATCTGAAGGCCAAAATAGTAAATCCGACCACCTCATCTCTATCCTCAAATAAATACCCTCTTGCTCCCCGACTTTCATTCTCGCGAGGGGTTCGTTTATATAACAAACGTCTCTCCAAAACCCTCTTATCTTCGGGAGCCTTATCTCTTTGCTGTAACGCCGAAACCATGTCTACCTCTGCTGCTTCCTTAGCCCTCCCCACATTCACCTCAAGGTTCCGGTCACTATGCTTGGGCGGTCAAGCCTTGTTCCCTCCCACTTCTGAATCTTACTCGTCTCTCCGATTAAAATCCAAGCCCCTTTCTTTGTCTGCCTCTTTTCTTCGATTTCCCACACCTTATTCCTCTCGTTTTATCCCCAATGTTGCTCTTTCTTCTGAGTTCGAACAAGATGAGTTTGTTACTGATGAAGACGAGGCTAGCTTCTCCCCCGACCTCAAACTCTTCGTTGGTAATCTTCCCTTCAATGTTGACAGTGCCCAACTTGCTGAGTTGTTCGAGAGCGCTGGAACTGTCGAGATGGTTGAGGTAATTTATGATAAAGTGACCGGAAGAAGCAGGGGATTTGGTTTTGTGACCATGTCCACCTCTGAGGAAGTTGAAGCAGCCGCTCAACAATTCAATGGCTATGAACTTGATGGGCGGGCATTGAGAGTAAATTTTGGCCCTCCTCCTCCTCGAAAGGAGAATGCCTCTTTCAGAGGTTCCAGAGTTAGTTCTGCTTCAGTTAGTGGAAATCGTGTTCATGTAGGTAATCTTGCGTGGGGTGTTGATAACTCGGCGCTTGAGAATCTGTTTGCTGAGCAGGGAAAGGTTTTGGAAGCCAAGGTAATTTATGACAGAGAGAGTGGAAGGTCAAGAGGATTTGGATTTGTGACTTACGGCACTGCTGAAGAGGTCAACGGTGCTATTGAGTCCTTAGATGGTGTGGACTTGAATGGCAGAGCTATCCGAGTATCATTAGCAGATGCTAAGCCGGGGCGTTCATTTTGA | 1080 | 0.4676 | MSISGWVFSSTLCHLKISWGRSPQKEGKKYLKAKIVNPTTSSLSSNKYPLAPRLSFSRGVRLYNKRLSKTLLSSGALSLCCNAETMSTSAASLALPTFTSRFRSLCLGGQALFPPTSESYSSLRLKSKPLSLSASFLRFPTPYSSRFIPNVALSSEFEQDEFVTDEDEASFSPDLKLFVGNLPFNVDSAQLAELFESAGTVEMVEVIYDKVTGRSRGFGFVTMSTSEEVEAAAQQFNGYELDGRALRVNFGPPPPRKENASFRGSRVSSASVSGNRVHVGNLAWGVDNSALENLFAEQGKVLEAKVIYDRESGRSRGFGFVTYGTAEEVNGAIESLDGVDLNGRAIRVSLADAKPGRSF | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco06g0797 | 359 | Gene3D | - | 153 | 259 | IPR012677 | - | |
| Acco06g0797 | 359 | Gene3D | - | 260 | 358 | IPR012677 | - | |
| Acco06g0797 | 359 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 275 | 353 | IPR000504 | GO:0003723 | |
| Acco06g0797 | 359 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 175 | 253 | IPR000504 | GO:0003723 | |
| Acco06g0797 | 359 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 278 | 347 | IPR000504 | GO:0003723 | |
| Acco06g0797 | 359 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 177 | 247 | IPR000504 | GO:0003723 | |
| Acco06g0797 | 359 | SUPERFAMILY | RNA-binding domain, RBD | 170 | 267 | IPR035979 | GO:0003676 | |
| Acco06g0797 | 359 | CDD | RRM2_NsCP33_like | 276 | 351 | - | - | |
| Acco06g0797 | 359 | SUPERFAMILY | RNA-binding domain, RBD | 270 | 357 | IPR035979 | GO:0003676 | |
| Acco06g0797 | 359 | SMART | rrm1_1 | 276 | 349 | IPR000504 | GO:0003723 | |
| Acco06g0797 | 359 | SMART | rrm1_1 | 176 | 249 | IPR000504 | GO:0003723 | |
| Acco06g0797 | 359 | PANTHER | OS02G0815200 PROTEIN | 126 | 353 | - | - | |
| Acco06g0797 | 359 | FunFam | Ribonucleoprotein A, chloroplastic | 153 | 276 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco06g0797 | Acco-ChrAcco06 | 5256460 | 5260102 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco06g0797 | 177 | 357 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 28.177 | 1.66e-13 | 69.7 |