Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0793 ATGGAAATGGAGGGTGAGACGAGACAGTCGAGATTTAAGAGGATCTGCGTCTTCTGTGGGAGCAGCCAGGGCAAGAAGAGCAGCTATCAAGATGCCGCCATTGAGCTTGGCAAGGAACTGGTCTCAAGGAACATCGATTTGGTGTATGGAGGGGGAAGCATTGGTCTCATGGGTTTAGTTTCACAAGCAGTTCATGATGGCGGTCGGCATGTCATTGGAGTTATTCCCAAGACGCTCATGCCTCGAGAGCTCACTGGGGAAACAGTGGGAGAAGTGAAAGCAGTGGCAGATATGCATCAAAGGAAGGCAGAGATGGCTAAGCACTCAGATGCTTTTATCGCCCTACCAGGAGGTTATGGGACTCTTGAGGAGCTTCTTGAAGTCATAACATGGGCTCAGCTTGGGATACATGACAAACCGGTGGGGTTGCTAAATGTTGACGGATACTACAACTCTTTGCTATCATTTGTTGACAAAGCTGTGGAAGAGGGATTTATTCATCCAAAGGCCCGCCACATAATTGTTTCTGCACCGACACCAAAAGAACTGATGAAGCAATTGGAGGAATATGTTCCCTGTCATGAAAGTGTTGCTTCCAAGCTGAGCTGGCAGATGGAACAGATGAGTTATGCTCAGGAGTATGACATGTCAAGTGTTAAGGACGAAGACATATTTGAAATTTCGTTGATTCTTCGTGAGCAACTGGCTCCGATCTCAAATCCACCTCTGCTTTCCCAGGTAAAGGAGGAATTGAAGGGAGAGGAAAAATGCTTGGACAGTCAACTGTGGCATGCTTGCGCCGGCGGCATGGTACAAATGCCGTCGTTGAACTCTAAGGTGTTCTACTTCCCTCAGGGTCACGCCGAGCATGCAAGTGGGCCCGTCGATTTCAAGAAATGCCGGAATTTTCCTCTTCCACCCTACATTTTATGCAGAGTCGACTCTGTTAAATACATGGCTGATCCCGATACAGATGAGTTATATGCCAAGCTTAGGCTTGTTCCTCTGAATCGGGAGGAGGCCAATTGTGATGAGAGCGGCGGCGGCATCGATGGATCTGAATCTCAAGAGAAACTTACTCACTTCGCAAAAACTTTGACTCAGTCAGACGCCAATAATGGAGGAGGCTTTTCTGTTCCTAGATTCTGCGCAGAGACCATTTTTCCTCCTCTGAACTTCAAAGCGGTGATACCTCTTCAGTATATTGAGGCTAAAGACGTTCATGGCGAATCGTGGAAGTTCAAGCACATTTACAGAGGCACACCGAGGCGACATCTTTTGACCACAGGATGGAGTCCATTTGTGAACAAGAAAAGGCTCGTTGCAGGGGATTCAATAGTATTTTTATGCAACAATAAAAAAGATATCTACGTAGCGGTTCGAAGGGCTAAAAGAAGAAATGGCCGTCTACTTTCTGCCTTCTTGATTGGAAATGATAGCAAAAAACCAGCAATCAATAATGGTACAGGAAATGGGAAAGTAAAAGCCGAAGCAGTTATTGAAGCTGCGGATCTTGCTGCTGAGGGACAGCCCTTTGAAGTTGCCTACTACCCTAGAGTAGGCACCCCTGAGTTCTGTGTAAAAGCTTCTTCAGTTAAAACGGCCATGCAAATTCGGTGGTGTCCTGGAATGAGGTTCAAGATGGCTTTTGAAGCAGAGGATTCACGAATAAGTTTGTTTATGGGAACTATATCGTCGGTGCAGGTTGCTGATTCTCTAGTATGGCCTGATTCACCTTGGAGGCTTCTCCAGGTTACGTGGGATGAACCAGGATTAGTTCAGGATGTGAAACGGGTGAGCCCATGGTTGGTTCAGTTGGTTTCGAACATGCCTACAATTCCTCCACCTTTTTCACCACCAACGAAGAGAATGAGGCTGCTTCAGCATCCAGATGTTCCACTTGATACCCATCAGATTTATGCGCCCACGTTTGTTGGCAACCTCCTAAGTTCCACGAACAACCCCTTTAGGAATTATGTACCTGAAACCACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTTATGGTGGTCTGCCCTTGGTAGATCTCGACCTCAATAATTTGCAGTTGCCTCTGTATTTGACTAGTTTACCACCTCTTGCTCAAGCTTCTATGCAAAACATGGAAAGTTATAACTCAGCAACGCAAAATCATGGCATGAGTGAGAATGTTTATCACTTCATTTTCAATAAAAATTCTGCCCCGTCTTCGGAGGAACAGGATCATGATAACAATACACCCCACATTGTGCTTTTTGGGAAAAAAATGATTCCAGCCACGAGCTGCTCAAAAGACAGTGTCTCCCCAGTTTTATATGGAAATGCTCATGAAGGGCCCAACTTTTTTAATGATGAGAACCAGGAGTCTGACGAGTGTTAA 2379 0.4611 MEMEGETRQSRFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFVDKAVEEGFIHPKARHIIVSAPTPKELMKQLEEYVPCHESVASKLSWQMEQMSYAQEYDMSSVKDEDIFEISLILREQLAPISNPPLLSQVKEELKGEEKCLDSQLWHACAGGMVQMPSLNSKVFYFPQGHAEHASGPVDFKKCRNFPLPPYILCRVDSVKYMADPDTDELYAKLRLVPLNREEANCDESGGGIDGSESQEKLTHFAKTLTQSDANNGGGFSVPRFCAETIFPPLNFKAVIPLQYIEAKDVHGESWKFKHIYRGTPRRHLLTTGWSPFVNKKRLVAGDSIVFLCNNKKDIYVAVRRAKRRNGRLLSAFLIGNDSKKPAINNGTGNGKVKAEAVIEAADLAAEGQPFEVAYYPRVGTPEFCVKASSVKTAMQIRWCPGMRFKMAFEAEDSRISLFMGTISSVQVADSLVWPDSPWRLLQVTWDEPGLVQDVKRVSPWLVQLVSNMPTIPPPFSPPTKRMRLLQHPDVPLDTHQIYAPTFVGNLLSSTNNPFRNYVPETTPAGMQGARHAYGGLPLVDLDLNNLQLPLYLTSLPPLAQASMQNMESYNSATQNHGMSENVYHFIFNKNSAPSSEEQDHDNNTPHIVLFGKKMIPATSCSKDSVSPVLYGNAHEGPNFFNDENQESDEC 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0793 792 FunFam CASP-like protein 3 189 - -
Acco06g0793 792 CDD B3_DNA 361 448 IPR003340 GO:0003677
Acco06g0793 792 FunFam Auxin response factor 360 464 - -
Acco06g0793 792 Pfam B3 DNA binding domain 362 463 IPR003340 GO:0003677
Acco06g0793 792 NCBIfam Rossman fold protein, TIGR00730 family 13 190 IPR005269 GO:0009691|GO:0016787
Acco06g0793 792 SUPERFAMILY MCP/YpsA-like 11 190 - -
Acco06g0793 792 SUPERFAMILY DNA-binding pseudobarrel domain 355 467 IPR015300 -
Acco06g0793 792 Pfam Auxin response factor 502 584 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Acco06g0793 792 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 254 756 IPR044835 GO:0003677|GO:0006355|GO:0009725
Acco06g0793 792 Gene3D - 539 612 - -
Acco06g0793 792 Gene3D - 360 464 IPR015300 -
Acco06g0793 792 SMART B3_2 362 464 IPR003340 GO:0003677
Acco06g0793 792 Pfam Possible lysine decarboxylase 57 187 IPR031100 -
Acco06g0793 792 ProSiteProfiles B3 DNA-binding domain profile. 362 464 IPR003340 GO:0003677
Acco06g0793 792 Gene3D - 3 189 - -
Acco06g0793 792 FunFam Auxin response factor 540 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0793 Acco-ChrAcco06 5216757 5231543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0793 253 764 B3 DNA Binding Superfamily AT4G30080 53.137 1.48e-168 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Acco06g0793 Lysine_decarbox 1.9e-45 CL0349