Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0777 ATGATGTCTGGTGACCCTTTCTCCTTATCCACTTCCATCGGAGGCTTTCCTCCCCAACAAAACCCAAACCCTAACCCTAAACCTAATCCCAAGAAGAAAAGGAATCTCCCAGGAACACCAGATCCAGATGCGGAGGTCATCGCGCTGTCACCGAAAGCACTCATGACAACCAACAGGTTCATTTGCGAGATATGCAACAAAGGGTTTCAGAGAGACCAGAATCTTCAGCTTCATCGGAGGGGTCACAACCTGCCATGGAAGTTACGACAAAGGTCCAACAAAGAAGTTCGAAAGAAGGTTTACATATGCCCGGAGAAGACGTGCGTCCACCACGACCCCTCCAGAGCACTCGGCGATCTCACCGGCATCAAGAAGCACTTCAGTAGAAAACACGGCGAGAAGAAATGGAAGTGTGACAAGTGTTCCAAGAAATACGCAGTCCAATCTGACTGGAAAGCTCACACCAAGACCTGTGGTACAAGAGAATACAAGTGCGATTGTGGCAACCTATTCTCCAGAAAGGACAGCTTCATTACACACAGAGCTTTCTGTGACGCCTTAGCGGAAGAGAGTGCCAGGCTCACCTCGGTTGCTCCAACAAATCTGAACTTCAAGAACGAAGGGAATAATGATCCCATTAGCTCAGCACAATCTAGTCAGCTGGGGCTTGAAAACAACGCAGACGTAATTTCTCAACTCGGTTCGCATGGATATCGTGCAGATTTTAATGCAAGTCTATCAATGTGGTTGAACCAGGGAAATAATCATCATCATAATAATAATGGTCTGGACGTTGGAGGGCTATATGGTTCTTCAGGTTTGGGTAGTGAGCATATGGCACAAATGACGACCCAAGCTAGTAATTTTGGGTCTTGCAATTTTGGAATGCCCGCTTCGAATTCAACAACAAACGCAGGTCTGTTACTATCAAGTGGGAAGAGGGGTGAAGCAATGTCAAAGCCAGCTTCTCCCATGTCAGCAACAGCTTTACTTCAGAAAGCAGCTCAGATGGGTTCCACCAGAAGCTCCAGCAGAAGCAACAACAACAATCCCTCTATATTCAGTGGCACTTTGGGAGTTATGTCGTCTTCTTCTAATTCCCACACGACCACTAATCTCAATGATAACAACACCACCGCCAACAATCCCCAGAATTTTAGTTCAACTAGCAGTGCTGAACCAATTCTAGCAACTAACAACTTTAGTACTGATAATCTTGACCAGCTCTTGATGCAGACCAGTGCAAAGCAAAGTGAACAAGTACAATTGAAGCTTTATGCAGGTGGTTCTTCATCAGAACATAGTTTGACGAGAGATTTTCTCGGCATGGGTGGTGGCGGTGCCGCCGGGCCTCCTCCTCCGTTTTTGCCGCAAGAACTGGCAAAGTTTGCGTCCATCGGGTCACCCATGGGTTTAACCCAATTTACTGCGAACCATTGA 1440 0.4681 MMSGDPFSLSTSIGGFPPQQNPNPNPKPNPKKKRNLPGTPDPDAEVIALSPKALMTTNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGNLFSRKDSFITHRAFCDALAEESARLTSVAPTNLNFKNEGNNDPISSAQSSQLGLENNADVISQLGSHGYRADFNASLSMWLNQGNNHHHNNNGLDVGGLYGSSGLGSEHMAQMTTQASNFGSCNFGMPASNSTTNAGLLLSSGKRGEAMSKPASPMSATALLQKAAQMGSTRSSSRSNNNNPSIFSGTLGVMSSSSNSHTTTNLNDNNTTANNPQNFSSTSSAEPILATNNFSTDNLDQLLMQTSAKQSEQVQLKLYAGGSSSEHSLTRDFLGMGGGGAAGPPPPFLPQELAKFASIGSPMGLTQFTANH 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0777 479 FunFam protein indeterminate-domain 12-like 39 107 - -
Acco06g0777 479 Pfam Zinc-finger double-stranded RNA-binding 60 82 IPR022755 -
Acco06g0777 479 Gene3D Classic Zinc Finger 39 111 - -
Acco06g0777 479 FunFam protein indeterminate-domain 5, chloroplastic-like 114 193 - -
Acco06g0777 479 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Acco06g0777 479 MobiDBLite consensus disorder prediction 305 391 - -
Acco06g0777 479 SMART c2h2final6 101 131 IPR013087 -
Acco06g0777 479 SMART c2h2final6 136 156 IPR013087 -
Acco06g0777 479 SMART c2h2final6 60 82 IPR013087 -
Acco06g0777 479 MobiDBLite consensus disorder prediction 325 391 - -
Acco06g0777 479 Gene3D Classic Zinc Finger 112 193 - -
Acco06g0777 479 MobiDBLite consensus disorder prediction 19 33 - -
Acco06g0777 479 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Acco06g0777 479 MobiDBLite consensus disorder prediction 1 45 - -
Acco06g0777 479 MobiDBLite consensus disorder prediction 1 18 - -
Acco06g0777 479 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Acco06g0777 479 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 453 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0777 Acco-ChrAcco06 5143319 5145069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0777 1 467 IDZ Gene Family AT5G03150 45.404 5.34e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco06g0777 zf-C2H2_jaz 6.9e-05 CL0361