LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco06g0774	ATGCTAAGCTCATCCCAAAACCACGTTGTTTTGGGGGGATGGATTCATAGGCTCGCTGTGCATAAACAAGGGGAATTCATCAGCGTCGTCATTAGCAAGGTAGAGAGATTTGTGAAGTGGCTGGAGGGAGAACTATCATTGTTGGTGGAAGAACAATCGATTGATGATGAAGAGAAGCGTGAACAGTGCGGAGAGAACAAGACAAAGTACTTTGGAACCCATGTTCATGGGTTGTCAAGGACACGTGCTTGTCATAACAACAAGGCACGTTTAACTGATTGTCAGTTAGTTGCGGGTCTATCTTTAACAACGGTGTCTATCCTGATACTGCAAGTGACAGCCATGAGTCATAGGCATTTGTATAGCCCGTCTCAAATATTTGAGAGTGATCATGACCAAAATTGGAATTCTATGCATACTGATCAACAGTATGCACACCTTGGTAGAGCTAGCACTTCAGAGAATGGTTCTTTCGTTTATCCTATGGAAAATATGTCTATAGATGGCATTTCTTTTGCCTCTAATTGGAATCCAGCCACAACGCCAAATGTATTTGCATCCTCAAGTCTCAATATTGAAGTACCACCTCGTCAATCTGATGCATCAGGAACTTCACATGATCATTTTCTGCATTCATCAAGTGCCGCAGCCTTCTTTACAGTTTCAGAAAATTATGCTCATCAGCCTCCTCCTCCTCCCCCCAATTATGATAGACAGCCATTTCACGTTGTTGATGGGGGTTTTATTGATCTAACAATGGGAAGTGGAAGAGGGCCTCACAAGCGGAAGAGCCCAGGAAATCCTCCAGTCTGTGAGAGAGGTAGTACGAGCAGATACATAAATGCTGGAAGTTCAACTGATCTTCCTATGTCTTCAGAACTACAGCAGGAGAAACCAAATATGGATTGTCAGTATTTGCCTCGGGATCAAGTTACCATGCCACTCACCTTCAGAGGTAGTGGCCTTTCAATCAGGGGGGAGGGTTCCTTGAGAAATGTGAGAAGCCGTTCTACACTTGATTTTGAATCCAACTTGGCTAGGACCCATTTATCTGGCAATCATTCACACAACTACTCCGTTGGTCTACCCATTGACCATTCTAGCACAATGGATCCGTCAGGTCAGAGTTCTAGCGGATTAACACGGGATTGGAGCCAAATGAGCACATCTCATGCTCATGGCAGGGTGATATTACCAGATACAAGTGCTCTTAATTGTGAGACAGGTCACTTCCTTGTTGGAAGTGGCACTAGTAATACCCCTGTAGATGTTGGGGGTTACCATCACGAATTTGGTACAAGCAGAAATCCTATTGTACCTCAAAGTTTTCATAATAATCCGACTCAGACTGCTAGGGGAGTGCGAAGCAACTTTTCACATAGGTCTACTCCAACTTTTAGACCTTCTTCAAGCTTGCGCTTGGGACATGTAGCACCATCAGATGATGGATTGCAAATGGTTGCCGATAATTACTCCTCGAGACATCCAAGGCCACTAACAACCATTGGCTGGCGGAACAGTGATAGAAATGGAAGGTCAAGGATATCTAGTGATAGATATCGACCACTGGCTGATGCATCTGGTCCTCACGATCGATTCTCTTCAGAGGGTTTCATGATTGTAGACCATGGGTTGCCACATGGATCTAGAAGTATGGTTGATCAGCATAGGGACATGAGGATGGACATTGACAACATGAACTATGAGGAACTTCTTGCCCTTGGAGAGAGGATTGGTCATGTCAGCACAGGATTGTCAGAGGACTTGATTTCAAAATGCATGACGGAAACAATATATTGTTCATCTGAGCAAAGTCAGGAGGAAGGAACTTGTGTGATCTGTTTGGATGAATACAAGGACATGGATGATGTTGGGACTCTGAAAACTTGCCGTCACGACTACCATGTGAGCTGCATTAGAAAGTGGTTATCCATGAAGAACAAATGTCCAATCTGCAAAGCTCCTGCTCTGCCAGATGATAAGAAGGATAAATGA	1995	0.4411	MLSSSQNHVVLGGWIHRLAVHKQGEFISVVISKVERFVKWLEGELSLLVEEQSIDDEEKREQCGENKTKYFGTHVHGLSRTRACHNNKARLTDCQLVAGLSLTTVSILILQVTAMSHRHLYSPSQIFESDHDQNWNSMHTDQQYAHLGRASTSENGSFVYPMENMSIDGISFASNWNPATTPNVFASSSLNIEVPPRQSDASGTSHDHFLHSSSAAAFFTVSENYAHQPPPPPPNYDRQPFHVVDGGFIDLTMGSGRGPHKRKSPGNPPVCERGSTSRYINAGSSTDLPMSSELQQEKPNMDCQYLPRDQVTMPLTFRGSGLSIRGEGSLRNVRSRSTLDFESNLARTHLSGNHSHNYSVGLPIDHSSTMDPSGQSSSGLTRDWSQMSTSHAHGRVILPDTSALNCETGHFLVGSGTSNTPVDVGGYHHEFGTSRNPIVPQSFHNNPTQTARGVRSNFSHRSTPTFRPSSSLRLGHVAPSDDGLQMVADNYSSRHPRPLTTIGWRNSDRNGRSRISSDRYRPLADASGPHDRFSSEGFMIVDHGLPHGSRSMVDQHRDMRMDIDNMNYEELLALGERIGHVSTGLSEDLISKCMTETIYCSSEQSQEEGTCVICLDEYKDMDDVGTLKTCRHDYHVSCIRKWLSMKNKCPICKAPALPDDKKDK	664

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco06g0774	664	FunFam	E3 ubiquitin-protein ligase MBR2 isoform A	576	657	-	-
	Acco06g0774	664	MobiDBLite	consensus disorder prediction	449	476	-	-
	Acco06g0774	664	MobiDBLite	consensus disorder prediction	449	470	-	-
	Acco06g0774	664	SMART	ring_2	611	652	IPR001841	-
	Acco06g0774	664	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	225	657	IPR045191	GO:0061630
	Acco06g0774	664	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	576	657	IPR013083	-
	Acco06g0774	664	MobiDBLite	consensus disorder prediction	256	275	-	-
	Acco06g0774	664	Pfam	Ring finger domain	610	653	IPR001841	-
	Acco06g0774	664	CDD	RING-H2_RNF24-like	609	656	-	-
	Acco06g0774	664	ProSiteProfiles	Zinc finger RING-type profile.	611	653	IPR001841	-
	Acco06g0774	664	MobiDBLite	consensus disorder prediction	494	510	-	-
	Acco06g0774	664	MobiDBLite	consensus disorder prediction	491	528	-	-
	Acco06g0774	664	SUPERFAMILY	RING/U-box	600	658	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco06g0774	Acco-ChrAcco06	5105170	5115890	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco06g0774	115	663	C3H Transcription Factor Family	AT2G37150	41.667	3.86e-106	331