Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0772 ATGAATGGATTTCATGAGCTGAAGTTAAAACGAAAGGCTCCTTTCTCGTGCGAAACCTCAGGTCTTGGCTATAGCGTATTGAATTTAAGGCCATTAATAACTACTGTCACAAACCACGTAGCTGATGTTCTTGACAGGATCAAATTTCCTGCTTCTATATTCATTTGTTTTGTGGAGCAAAAGCCTTTCGTGAAAATCGATCTTGAAAATTCCTTTCTTTGCAGTTCTTGTTCTTTTTATTCGTTTGTCAATATGCAGATCTTCGTGAAAACCTTGACCGGAAAGACAATCACCCTCGAGGTGGAAAGCTCCGATACTATTGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGTATCCCTCCGGATCAGCAGAGACTCATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACTCTCGCCGATTACAACTTTCAGAAAGAGTCGACGCTTCACCTCGTTCTTCGTTTGAGGGGCGGTATGCAGATCTTCGTCAAAACCCTAACCGGAAAGACAATCACTCTTGAGGTGGAGAGTTCCGACATCATAGATAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGGCCGATTACAACATACAGAAAGAATCGACCCTTCACCTCGTCCTCCGATTGAGGGGCGGTATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATTACTTTGGAGGTTGAGAGTTCTGATACAATCGACAACGTGAAGGCCAAGATCCAGGATAAAGAGGGTATTCCTCCGGATCAGCAGAGACTTATCTTCGCCGGTAAACAATTGGAAGACGGCCGTACGCTTGCGGATTACAATATCCAAAAGGAATCTACGCTTCACCTTGTGCTTCGTCTTCGCGGAGGAATGCAGATTTTCGTCAAGACCCTGACGGGGAAAACCATCACTTTGGAAGTTGAGAGTTCCGACACTATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGTATTCCCCCTGATCAGCAGCGTTTGATCTTTGCCGGAAAGCAATTGGAAGATGGGAGGACCCTTGCGGATTATAACATCCAGAAGGAGTCCACTCTTCATCTGGTGCTTCGTCTGCGTGGAGGCATGCAGATTTTTGTGAAGACGCTCACCGGAAAGACTATAACTCTGGAAGTCGAGAGCTCGGATACCATTGACAACGTGAAGGCGAAAATTCAGGATAAGGAGGGGATTCCGCCGGACCAGCAGCGTCTCATCTTCGCTGGGAAACAGCTTGAGGACGGACGCACTCTTGCAGATTATAACATTCAGAAGGAGTCGACCCTTCATCTTGTCCTCCGCCTTCGTGGTGGGGATATCTGA 1401 0.4789 MNGFHELKLKRKAPFSCETSGLGYSVLNLRPLITTVTNHVADVLDRIKFPASIFICFVEQKPFVKIDLENSFLCSSCSFYSFVNMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNFQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDIIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDI 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0772 466 PRINTS Ubiquitin signature 268 288 IPR019956 -
Acco06g0772 466 PRINTS Ubiquitin signature 289 310 IPR019956 -
Acco06g0772 466 PRINTS Ubiquitin signature 247 267 IPR019956 -
Acco06g0772 466 ProSiteProfiles Ubiquitin domain profile. 313 388 IPR000626 GO:0005515
Acco06g0772 466 FunFam Polyubiquitin 3 389 464 - -
Acco06g0772 466 CDD Ubl_ubiquitin 313 388 - -
Acco06g0772 466 ProSiteProfiles Ubiquitin domain profile. 237 312 IPR000626 GO:0005515
Acco06g0772 466 FunFam Polyubiquitin 3 85 160 - -
Acco06g0772 466 SUPERFAMILY Ubiquitin-like 387 464 IPR029071 -
Acco06g0772 466 ProSitePatterns Ubiquitin domain signature. 263 288 IPR019954 -
Acco06g0772 466 ProSiteProfiles Ubiquitin domain profile. 389 464 IPR000626 GO:0005515
Acco06g0772 466 ProSiteProfiles Ubiquitin domain profile. 85 160 IPR000626 GO:0005515
Acco06g0772 466 SMART ubq_7 85 156 IPR000626 GO:0005515
Acco06g0772 466 SMART ubq_7 161 232 IPR000626 GO:0005515
Acco06g0772 466 SMART ubq_7 237 308 IPR000626 GO:0005515
Acco06g0772 466 SMART ubq_7 313 384 IPR000626 GO:0005515
Acco06g0772 466 SMART ubq_7 389 460 IPR000626 GO:0005515
Acco06g0772 466 ProSitePatterns Ubiquitin domain signature. 415 440 IPR019954 -
Acco06g0772 466 FunFam Polyubiquitin 3 161 236 - -
Acco06g0772 466 CDD Ubl_ubiquitin 161 236 - -
Acco06g0772 466 SUPERFAMILY Ubiquitin-like 84 160 IPR029071 -
Acco06g0772 466 SUPERFAMILY Ubiquitin-like 160 236 IPR029071 -
Acco06g0772 466 ProSitePatterns Ubiquitin domain signature. 187 212 IPR019954 -
Acco06g0772 466 Gene3D - 238 312 - -
Acco06g0772 466 Gene3D - 313 388 - -
Acco06g0772 466 Gene3D - 161 237 - -
Acco06g0772 466 Gene3D - 81 160 - -
Acco06g0772 466 Gene3D - 389 466 - -
Acco06g0772 466 Pfam Ubiquitin family 163 234 IPR000626 GO:0005515
Acco06g0772 466 Pfam Ubiquitin family 315 386 IPR000626 GO:0005515
Acco06g0772 466 Pfam Ubiquitin family 239 310 IPR000626 GO:0005515
Acco06g0772 466 Pfam Ubiquitin family 391 462 IPR000626 GO:0005515
Acco06g0772 466 Pfam Ubiquitin family 87 158 IPR000626 GO:0005515
Acco06g0772 466 SUPERFAMILY Ubiquitin-like 312 388 IPR029071 -
Acco06g0772 466 CDD Ubl_ubiquitin 389 464 - -
Acco06g0772 466 FunFam Polyubiquitin 3 237 312 - -
Acco06g0772 466 ProSitePatterns Ubiquitin domain signature. 339 364 IPR019954 -
Acco06g0772 466 SUPERFAMILY Ubiquitin-like 236 312 IPR029071 -
Acco06g0772 466 CDD Ubl_ubiquitin 85 160 - -
Acco06g0772 466 ProSitePatterns Ubiquitin domain signature. 111 136 IPR019954 -
Acco06g0772 466 ProSiteProfiles Ubiquitin domain profile. 161 236 IPR000626 GO:0005515
Acco06g0772 466 FunFam Polyubiquitin 3 313 388 - -
Acco06g0772 466 PANTHER UBIQUITIN 237 314 - -
Acco06g0772 466 CDD Ubl_ubiquitin 237 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0772 Acco-ChrAcco06 5097819 5102960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0772 389 466 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.718 1.77e-46 155