Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0760 ATGCAAACTCATGATTGCACGTTTTCTGCAGAAAAGAGCTCCTTGCCTGTCGCTGAACAGTGTGCTTGGGCATTAGGAAATGTGGCTGGGGAAGGTGAGGAGTTGAGAAATGTTCTGCTAGCTCAAGGGGCCTTGCCTACCTCTTGCAAGAATGATGCTGCCCAACAAAGGGTCAACTGTGAGAACAGCTGCCTGGGCTTTGTCCAATTTAATAAAGCATTGCTGCGTGTTCCTTTTTGGAAATATATCATGAGCCGAGCATTTTTGCATGCTTGTGGGCTTGAAGAAATCTCAAATGGTGGTAGTGCAAATTGCAAATCCCCTTTCTATACTATGGTTCTATGGAAAGATTATATCCTGGAAGTATTACAGAGGATAATCAGGGACGATGAACTAGCTACTGAAGTGGCCTTGGTTTTGCGGAGTTTAGGTAATCTGATTGGTGGTGATTCCGTTACAATTTATGCTGTTATTGTGCTAGGACGTGGAGTTACAGCTTTGTTATCTATGCGGGAAGCAGCATGGGTGTTGTCTAATATAGCTGCAGGTTCGGCTGAGCACAAGCAGTTAATATATTCCAGTGAGGCAATGCCTTTGCTGTTGCGCCTTCTTTCTGCGGCTCCATTTGATATAAGAAAGGAAGCAGCATATGTATTGGGCAACCTTTGTGTTGCTCCATCTAAAGGTGAAGGCGGCGAGAAGCCGAGTCTGATCCTGGATCACTTGGCTCCTCTTGTTGAAAGAGGATGCTTGCCTGGCTTTGTTGATTTGGTTAGATCTGCTGATATTGAGACTGCTAGATTAGGACTTCAATTCATAGAGCTGGTGCTGAGGGGGATGCCAGAGGGTGGGGGGTCCAAGCTTGTAGAACAAGAAGATGGGATTGAAGCCATGGAAAGATTTCAGTTTCATGAAAATGAGGATCTGAGAACCATGGCAAAGAGTCTAGTTGACAAGAATTTTGCAGAGGACTACGGGCTTGATGACTTGTTGATAGTGTTGCCAGGATTAGCAATAGATCCCTATGTGGTGAGCAAGCCTTGTTGTCTTCAAAGAATGACCAACGGCTCTTCTTTTTTGTTTTCCGGCATTCGCTTCGATAAAAAAAGGTTCGGCCGCGACATTGCCAAGTTCGAGAAAAGAGAGAAAGACGATTCCGTGAAGGTTTCGAGCTCGGTTGAAATTGAGAAAGCAGAACCAGTTGTTGGAAAAGCGCCTGCAAAGAAGAGGAAGCGAAAGGGAGTAGTTTCAGAAACAGTTGAGGGATTCAATGTCTTCAAGAAGTCCAAATCAGAGGCAGTTCAACCTAAAGATGATGATAAAGCTGTGGTTGAGACTGTTCAGCAGACAAAAGAACAAAACAGGCAACTTGAGCGGGATGCTCTATTCAGGAAGAGGCACAACATTCATGTGTCTGGGTACAATGTCCCATCCCCGCTTCAAAATTTTGAGGAGTTGAGCTCAAGATATAAATGTGAACCATATATGTCACGCAATCTGGCAGAACTCGGATTCAGAGAACCAACACCAATCCAAAGACAAGCTATTCCTGTTCTTTTACATGATCGTGAATGCTTTGCCTGTGCCCCAACTGGCTCTGGGAAAACATTGGCATTTGTGTGTCCTATGCTTATAAAGCTTAAGGATCCTTCAAAAAATGGCATTCGAGCTGTTATCCTTTGTCCCACTCGTGAATTATCTTCCCAAACTTACAGAGAGTGCAAAAAGCTGGCTAAAGGAAAAAAGTTCCGTATTAAGTTAATGACTAAAGAGCTAGCAAGAAATGGTGATTTAACTAAATATTCATGCGATATACTTATATCCACACCACTTCGATTACACTTGGCTATCCGAAGGAGGAGGAAGAAGGTTGACCTTAGTAGAGTTGAGTATCTTGTCCTTGATGAATCTGATAAGCTCTTTGAGCTTGGGTTATTCGAGCAGATCGATTCTGTTATCCAAGCATGTTCAAACCCTTCAATAATACGCTCTCTTTTCAGTGCCACTTTACCTGATTCTGTTGAGGATCGTGCCCGGGAGCTTATGCATGATGCCATTAGAGTTATTGTTGGCCGAAAGAATATGGCTTCTGAAACAATAAAGCAAAAATTAGTTTTTACTGGAAGTGAAGAGGGAAAACTTATGGCAATTCGCCAAAGCTTTGCGGAGAGTTTAAATCCCCCTGTATTGGTCTTTGTCCAAAGCAAGGAGCGAGCAAAAGAGCTCTATGGTGAACTACAATTTGATAACCTCAGAGTTGGTGTCATCCATTCTGATTTGTCCCAAAAGGAGAGAGAAGATGCTGTTGATAATTTCAGAGCGGGCAAAACATGGGTTTTAATTGCTACTGATGTAGTTGCTCGAGGCATGGATTTCAAAGCTGTGAAATGTGTGATTAACTATGATTTTCCAGATTCAGCTGCTGCTTACATCCATAGGATCGGTCGTTCTGGGAGAGCAGGGAGGGCTGGAGAAGCTATAACATTTTATTCGGAGGAAGACATGCCCTTGCTGCGTAATATAGCCAATCTGATGGCAACATCAGGTTGTGAAGTTCCACCTTTTCTCCTGGAGCTGCCCAAAAAGAAGTGGAAGAAACACCGCCCCAAAAGAGATTCTATCTCTACCAAACCCCAAGTATGA 2643 0.4351 MQTHDCTFSAEKSSLPVAEQCAWALGNVAGEGEELRNVLLAQGALPTSCKNDAAQQRVNCENSCLGFVQFNKALLRVPFWKYIMSRAFLHACGLEEISNGGSANCKSPFYTMVLWKDYILEVLQRIIRDDELATEVALVLRSLGNLIGGDSVTIYAVIVLGRGVTALLSMREAAWVLSNIAAGSAEHKQLIYSSEAMPLLLRLLSAAPFDIRKEAAYVLGNLCVAPSKGEGGEKPSLILDHLAPLVERGCLPGFVDLVRSADIETARLGLQFIELVLRGMPEGGGSKLVEQEDGIEAMERFQFHENEDLRTMAKSLVDKNFAEDYGLDDLLIVLPGLAIDPYVVSKPCCLQRMTNGSSFLFSGIRFDKKRFGRDIAKFEKREKDDSVKVSSSVEIEKAEPVVGKAPAKKRKRKGVVSETVEGFNVFKKSKSEAVQPKDDDKAVVETVQQTKEQNRQLERDALFRKRHNIHVSGYNVPSPLQNFEELSSRYKCEPYMSRNLAELGFREPTPIQRQAIPVLLHDRECFACAPTGSGKTLAFVCPMLIKLKDPSKNGIRAVILCPTRELSSQTYRECKKLAKGKKFRIKLMTKELARNGDLTKYSCDILISTPLRLHLAIRRRRKKVDLSRVEYLVLDESDKLFELGLFEQIDSVIQACSNPSIIRSLFSATLPDSVEDRARELMHDAIRVIVGRKNMASETIKQKLVFTGSEEGKLMAIRQSFAESLNPPVLVFVQSKERAKELYGELQFDNLRVGVIHSDLSQKEREDAVDNFRAGKTWVLIATDVVARGMDFKAVKCVINYDFPDSAAAYIHRIGRSGRAGRAGEAITFYSEEDMPLLRNIANLMATSGCEVPPFLLELPKKKWKKHRPKRDSISTKPQV 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0760 880 SMART helicmild6 740 821 IPR001650 -
Acco06g0760 880 Gene3D - 696 875 IPR027417 -
Acco06g0760 880 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 516 688 IPR014001 -
Acco06g0760 880 Gene3D - 460 695 IPR027417 -
Acco06g0760 880 SMART arm_5 151 182 IPR000225 GO:0005515
Acco06g0760 880 SMART arm_5 184 224 IPR000225 GO:0005515
Acco06g0760 880 CDD SF2_C_DEAD 700 830 - -
Acco06g0760 880 Gene3D - 8 322 IPR011989 -
Acco06g0760 880 CDD DEADc_DDX52 498 691 IPR044764 GO:0003724|GO:0005524|GO:0030490
Acco06g0760 880 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 485 513 IPR014014 GO:0003724
Acco06g0760 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 553 841 IPR027417 -
Acco06g0760 880 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 479 767 IPR014013 GO:0005524
Acco06g0760 880 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 699 860 IPR001650 -
Acco06g0760 880 Pfam Armadillo/beta-catenin-like repeat 185 223 IPR000225 GO:0005515
Acco06g0760 880 Pfam Helicase conserved C-terminal domain 723 821 IPR001650 -
Acco06g0760 880 SUPERFAMILY ARM repeat 13 319 IPR016024 -
Acco06g0760 880 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 438 848 - -
Acco06g0760 880 SMART ultradead3 504 703 IPR014001 -
Acco06g0760 880 Pfam DEAD/DEAH box helicase 509 675 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0760 Acco-ChrAcco06 5016901 5027120 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0760 498 859 Eukaryotic Initiation Factors Gene Family AT3G19760 32.692 2.61e-55 195