Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0712 ATGGATCGCGTAGCATCAGTTAAGCAACAAAGCAGCTTCGAAGACATAGCGAAGTGTCTAGTGATGCTGTCTCATCATCATGTCGGAGACAACAACGTAATGAGATCAAAGCCTCAAAATGACGCCGTAGGGTGTGTGGAATACGAGTGCAAAACATGCAAACGCAAGTTCTCGTCGTTTCAGGCTCTTGGAGGGCATAGGGCTAGCCACAAGAGACCAAGGCTGGATGGAGATCGTGACCTGAGAGAGCAGGCTAAGTCTCTGAGCTTAGCAACTTGCAAACCTAAAGTTCATGAATGTTCCATTTGTGGTCTTGAGTTCTCTCTGGGCCAGGCACTGGGTGGCCACATGAGAAAACACAGATTAGCCACCCTAAACGACGACGTCGTCCACCATCGCTTCTCTTCCAAAGTGCCAGTTTTGAAGAGATCCAACAGCAAGAGGGTTGAATTCTTGGACCTTAACTTGACCCCTCTTGAGAATGACTTGAAGCTCTTGTTTGGCAGCAAGGCACCTAAGGTTGAAGCCTTCGTCGTCTGA 540 0.4852 MDRVASVKQQSSFEDIAKCLVMLSHHHVGDNNVMRSKPQNDAVGCVEYECKTCKRKFSSFQALGGHRASHKRPRLDGDRDLREQAKSLSLATCKPKVHECSICGLEFSLGQALGGHMRKHRLATLNDDVVHHRFSSKVPVLKRSNSKRVEFLDLNLTPLENDLKLLFGSKAPKVEAFVV 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0712 179 SMART c2h2final6 98 120 IPR013087 -
Acco06g0712 179 SMART c2h2final6 48 70 IPR013087 -
Acco06g0712 179 Pfam C2H2-type zinc finger 48 73 - -
Acco06g0712 179 Pfam C2H2-type zinc finger 97 121 - -
Acco06g0712 179 SUPERFAMILY beta-beta-alpha zinc fingers 48 120 IPR036236 -
Acco06g0712 179 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Acco06g0712 179 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Acco06g0712 179 Gene3D Classic Zinc Finger 45 120 - -
Acco06g0712 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Acco06g0712 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 120 IPR013087 -
Acco06g0712 179 PANTHER ZINC FINGER PROTEIN ZAT5 8 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0712 Acco-ChrAcco06 4717551 4718090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0712 8 175 C2H2 Transcription Factor Family AT2G37430 44.444 1.64e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco06g0712 zf-C2H2_6 9e-11 CL0361