Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0660 ATGGGCCCATTTAAAATACCCTCAAACCCTAGTATATGTCTATATGAGCAGCAAAAGGAGCCGGTCATTCTCTCGTTTTGTCCCTTCACAGTAAGGAGAGCGGGAGGGCAGAGATCAGTGAAGATGTCGAAGAGAGGTCGCGGTGGTTCGGCCGGAAACAAGTTCCGGATGTCCCTGGGTCTACCGGTGGCGGCGACGGTCAACTGCGCCGATAACACTGGAGCCAAGAATTTGTACATCATTTCGGTGAAGGGGATCAAGGGCCGCCTTAACCGTTTGCCGTCTGCTTGCGTTGGTGATATGGTCATGGCTACCGTGAAGAAAGGGAAGCCTGATCTCCGGAAGAAGGTCTTGCCCGCCGTGATCGTACGCCAGCGGAAGCCTTGGCGCAGAAAGGACGGTGTTTACATGTATTTTGAAGATAATGCTGGTGTCATTGTGAATCCCAAGGGAGAAATGAAAGGTTCTGCTATCACCGGTCCAATTGGTAAGGAGTGTGCTGATTTGTGGCCTAGGATTGCAAGTGCAGCCAACGCAATTGTCTGA 546 0.5165 MGPFKIPSNPSICLYEQQKEPVILSFCPFTVRRAGGQRSVKMSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0660 181 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 61 180 IPR000218 GO:0003735|GO:0005840|GO:0006412
Acco06g0660 181 ProSitePatterns Ribosomal protein L14 signature. 120 146 IPR019972 -
Acco06g0660 181 Pfam Ribosomal protein L14p/L23e 63 181 IPR000218 GO:0003735|GO:0005840|GO:0006412
Acco06g0660 181 SMART Ribosomal_L14_2 60 181 IPR000218 GO:0003735|GO:0005840|GO:0006412
Acco06g0660 181 FunFam 60S ribosomal protein L23 42 181 - -
Acco06g0660 181 SUPERFAMILY Ribosomal protein L14 52 181 IPR036853 GO:0003735|GO:0005840|GO:0006412
Acco06g0660 181 Gene3D Ribosomal protein L14 42 181 IPR036853 GO:0003735|GO:0005840|GO:0006412
Acco06g0660 181 Hamap 50S ribosomal protein L14 [rplN]. 60 181 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0660 Acco-ChrAcco06 4265876 4267831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0660 42 181 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 97.857 3.52e-98 278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1703 02 13092752 13094266 Acco06g0660 06 4265876 4267831 CCT
Acco06g0660 06 4265876 4267831 Acco06g0660 06 4265876 4267831 ECH