Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0658 ATGATTGATGAAACACCGTCTGGTTGGGGCTTCAAGAACAAGCAATTTGCCTTGTATTGTCGCTGGGAAATAATGGCAGCACGCACAACCTCTTCCATTGAAAGGTCAAGCACTAAGCAGCTCAATAACATGGGTATGTCTGGGCCATTGCCGTCATCCTTCTCAGTCCTTCCAACACCGATGGGGGAGACATTTGCCAAGTTTTCTGATTCTCAGCCGGCTGTCATGGCAAAAGAACTTGTGTCTGGGCCTATAACTCAGCCAAGTCATTTAAATTCCAGCGGAGCAGTTGGGCACATGTTTTCATCCTCCCCGGGATATTCAACTGATCTTCATCACTCATCTCTTTTGCCTCATGAAAAACACTCAACAAGGGATCATTTCATTTCACATTCATCCAGTGACGTGGGTTCTCTGCCATTTTCTTATTCTTCCAATAGTGGACCGCTTCCTTCGTCTACACCAAATAATTATTTCAAAGAAAACAGTGCTTCCTGGAATATAGATGCCCTGCCCAACTTCGATTTCCCTGTAAATAGTGCCATCGAGAATGGTCAAGCAGAAAACAGTGCCTGCACTGTCACGGCATCCGAAGGGTACGCTAAGCAAATTGAATGGCAAGAGTGGGCTGACCAGCTTATAAGTGAAGATGACCCTTTGACTTCTAATTGGAATGACCTACTTACTGACAACGTTCAAGATCTTGAACCAAAGGTGGGATGCCAGGTCCCACATATTCCAGGAAACCAGTCCCAAGGTCAGCAGCTACTTCCTGCTTCATCTGGAAACAATTGCTTTGGTGCCCCCCCAGCTTCCTCAGCAAGTTCTGCTCCTGCCAAGCCACGGATGCGCTGGACACCAGAGCTTCATGAGGCCTTTGTGGAGGCTGTCAACAAACTTGGTGGCAGTGAAAGAGCTACTCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGTCACTTGCAGAAATACAGGACTGCTAGATATAGACCGGAACCATCTGAAGGATCCTCTGAGAAACGAGTAACTTCCATTGAAGATATGCCTCCTCTAGACTTGAAAACTGGTATTGAGATCACTGAAGCTCTGCGGCTGCAGATGGAGGTTCAGAAGCGGTTGCATGAGCAACTTGAGATTCAACGAAATCTACAACTGCGAATAGAAGAACAAGGAAGGTACCTTCAAATGATGTTTGAGAAGCAATGCAAATCTGGCGCAGACAATAAGGCATCATCAGCATCTGCCACAGAGAATCCATCTGTACTGTCTTCAGATGCTATCAAAGATTGTCCTGCCAAAGGTGGGGCGGAAACCTGCCAAGTGGAGGGCGATTGCAAGTCAGGACGAGATCAAGCTAATAGCAATATTGCCGTTGAGGAAAGCTCTCTGGAAGTGGGTATGAAGAATGATGGTCCTGAAAATCAAGCTTCTCATAATGCTAAGCAACAAAACAGTGAAGAGAGTGGTCCAGCCTCAAAGAGGCAGAGGGCAGATGAGTAA 1524 0.4606 MIDETPSGWGFKNKQFALYCRWEIMAARTTSSIERSSTKQLNNMGMSGPLPSSFSVLPTPMGETFAKFSDSQPAVMAKELVSGPITQPSHLNSSGAVGHMFSSSPGYSTDLHHSSLLPHEKHSTRDHFISHSSSDVGSLPFSYSSNSGPLPSSTPNNYFKENSASWNIDALPNFDFPVNSAIENGQAENSACTVTASEGYAKQIEWQEWADQLISEDDPLTSNWNDLLTDNVQDLEPKVGCQVPHIPGNQSQGQQLLPASSGNNCFGAPPASSASSAPAKPRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPEPSEGSSEKRVTSIEDMPPLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGADNKASSASATENPSVLSSDAIKDCPAKGGAETCQVEGDCKSGRDQANSNIAVEESSLEVGMKNDGPENQASHNAKQQNSEESGPASKRQRADE 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0658 507 NCBIfam myb-like DNA-binding domain, SHAQKYF class 280 334 IPR006447 GO:0003677
Acco06g0658 507 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 255 497 IPR044848 GO:0003700
Acco06g0658 507 MobiDBLite consensus disorder prediction 413 507 - -
Acco06g0658 507 Pfam Myb-like DNA-binding domain 282 333 IPR001005 -
Acco06g0658 507 Gene3D - 279 338 - -
Acco06g0658 507 FunFam Myb family transcription factor 279 337 - -
Acco06g0658 507 MobiDBLite consensus disorder prediction 413 431 - -
Acco06g0658 507 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 277 337 IPR017930 -
Acco06g0658 507 SUPERFAMILY Homeodomain-like 278 334 IPR009057 -
Acco06g0658 507 Pfam MYB-CC type transfactor, LHEQLE motif 365 412 IPR025756 -
Acco06g0658 507 Coils Coil 368 388 - -
Acco06g0658 507 MobiDBLite consensus disorder prediction 480 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0658 Acco-ChrAcco06 4253663 4257346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0658 33 439 G2-like Transcription Factor Family AT4G28610 46.462 2.72e-101 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Acco06g0658 Myb_DNA-binding 5.2e-09 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1706 02 13105039 13109348 Acco06g0658 06 4253663 4257346 CCT
Acco06g0065 06 472878 477884 Acco06g0658 06 4253663 4257346 CCT
Acco06g0658 06 4253663 4257346 Acco06g0658 06 4253663 4257346 ECH
Acco02g1706 02 13105039 13109348 Acco06g0658 06 4253663 4257346 ECH