Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0639 ATGGAGGAAGACGAAGACAGAATTTTGCTTAATAGTTTGGGCGTAGAGTCTGCCAATCACGAATGCATCGAAAGAAACGTATTAGCTGAGGCACAGAATGACGTGGTGACCATTACTGAAGCTGATGGGAGCTCAAAGGAAGAATCTACTCAGAAATATGAAAATGCTGATCCATCTTCTATTAGCAAAGCAGAACTTTATCATAAGTTGAGGGCAGTAGATTTTGAAATCAATGCAGTTGCTTCCACTATCCAGGAAGTGAGAAATATCGATAGTAATGGAGATTGTATTGATGGTGGTGATTCCTACGGGGATCTAGGGACTACCAAGGATGCTTCCTCCAATGATTTGAATATTCAACATGTTCTTGCTGCTGATAGGTTAGAAAGCCTAAAGAAGACAAAGGCTCAACTTGAAAAAGAGCTTTCAGATTTGTTCAATGAGAAGCCGAGCAAAAGTATTGATCAGGACAAAGAGAATGAGATCTTTAATTTGGTTAAGGAAGATCGAAGATCCAAGAGGAAGCCTAAGGAAGTTAAAAGCTTACCAAAAGGCTCAGGGAAACGGCATAAAACAGTTTCACTTAATGATGATGTTGATTTTGATGCAGTTTTAGATGCCGCCTCAGCAGGTTTTGTTGAGACAGAAAGGGACCATTTGGTAAGGAAAGGGATTTTGACCCCATTTTCTAACCTGAAGGGCTTTGAGCGCCGCTTTCAACAATCAGAAGCATCTAGTAGTTATGGTGCGAGTCAAGAACAAAAGACAGATGATCTTACTTCTTCTAGTCTTGAAAGAGCTGCCCGCTCAATATCTGAGGCAGCCAGAGCTCGCCCAACCACCAAGTTGCTTGAGTCTGAAGATCTGCCAAAGCTTGATGCACCCACTCATCCTTTTGTCAGACTCAAATTACCACTAAAACTTCCTCAGTCCCAAGAAAGAGAGCTAGAGAAGAAAAATAATTTGAAAAGGCAAAAAAGGCGACCTTTGCCTGGTAGGAAATGGACAAAACGTGTATCTAGTGAGGAAATACATTCAAGAGAGACTGAGGAAGCAAGTGGATGCCTAGACCCTTCCAGTTGTGAAAATTTAGATGCTCAGGATTTTGAATGTGCTGATCATGAACCTTCTTTTATAACATTAGAAGGTGGGCTGAAAATCCCTGATAATGTTTTTGATGCACTATTTGACTATCAAAAGATTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGTCTTGGTAAAACCATCCAGGTTTTATCTTTTCTTGGTGCATTGCATTTTAGTGGTATGTACAAACCAAGCATTATCATTTGTCCTGTGACCCTCATGCGACAGTGGAAAAGGGAAGTTAAAAAATGGTACCCAAAATTTCATGTAGAGCTTTTACATGATTCTGCACGAGATCCTGATGTTAGAAAGAAGCAATCCAAATGTGATGAATCAGACTATGATAGTAATAGTTCAAGTGACAGTGACTATGAGACCAATATTCAATCAAAAAGCACAAGAAAATGGGAATCCCTGATAAGTCGTGTGATGAGAACGGAATCTGGATTGCTTATCACAACATATGAGCAGCTCAGAATATTGAGGGACCTGTTACTCGACATTGAATGGGGTTATGCGATTCTTGATGAAGGACACAGAATAAGGAATCCAAATGCTGAAATTACTCTAGTTTGCAAACAGCTACAGACTGTACACCGCATCATAATAACTGGCTCACCTATACAGAACAAACTGACTGAACTGTGGTCATTGTTTGATTTTGTTTTCCCTGGAAAGTTGGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCTGTTCCTATAGCACTGGGTGGATATGCAAATGCTTCACCATTACAAGTATCAACAGCATACAGGTGTGCTGTGATGCTTCGTGATTTGATCATGCCTTATCTTCTTCGGCGGATGAAAGCAGATGTGGATGCCCACCTTCCAAAGAAAACTGAGCATGTTTTATTTTGTAGTCTTACTACTGAGCAAGTATCTGCTTATAGAGCATTTCTGGCAAGCTCTGAAGTGGAGCAAATCTTGGATGGACGGAAGAATTCTCTTTATGGAATCGACGTAATGCGTAAGATTTGCAACCACCCTGACTTGCTTGAAAGGGAACATGCATATGGAAATCCAGACTATGGAAATCCAGAACGCAGTGGCAAAATGAAAGTTGTGGCACAGGTGCTTAATGTTTGGAAGGAACAGGGTCATCGAGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGATATTATTGAGAACTTTTTGACCACTTCTGGTCATAATTACCGGAGAATGGATGGAGCCACTCCCATAAAACAAAGGATGGCTTTAATTGATGAATTTAATGAGTCAAGGGAAGTATTTGTATTCCTTTTAACAACAAAAGTTGGGGGCTTGGGCACGAATCTTACTGGTGCAGACAGGGTGATTATCTTTGACCCTGATTGGAATCCTTCAACTGACGTTCAGGCCAGAGAACGAGCTTGGCGAATTGGTCAGACACAAGATGTGACAGTTTATAGGTTGATCACGCGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATATACAAACATTTTCTTACTAATAAGATATTGAAGAACCCACAGCAGAAAAGATTCTTTAAAGCTCGAGATATGAAAGATCTTTTTAAACTGAATGTGGATGACAAAAGTGGGCCAACTGAAACGTCAACTATTTTCGGTCAAATTTCTGAAGATGTAAATATTGTTGGGGCAAATGAAGATAAGCAGGATGAGCATAAACACCCCCAAACTGCTGAACCAGCTTTTGATGATGTTATAGTTAATAGGGATGGCAGGTCAAAAACAAGATCAATTAAGGGAAAGGGAAAAGAGGAAACAGATCGTCTTGATGAAGCAGATGAGGAAACAAATATATTGAAAAGTCTTTTTGATGCCCATGGGTTACATAGTGCTGTGAACCATGATTTGATCATGAATGCCAATGATGAGGAAAAGATGAGGCTGGAGGAGCAAGCTTCCCAGGTTGCACAGAGAGCCGCAGAAGCTTTACGTCAGTCTCGAAAACTCCGAAGCCGTGACAGCATCACTGTTCCTACATGGACAGGAAGGTCAGGAACTGCTGGTGCACCTTCCTCTTTTCGTCGAAAGTTTGGTTTAACCGTGAATTCCCAGTTGGTGAGTAATTGCAAAGAATCTGGTGAGTTGACTGGTGATGGAACTAGAAAATTAAATGGATCTGCTGCTGGGGCATCATCCGGTAAGGCATTATCTTCTGCTGAACTTTTGGCTCAAATCCGGGGTAACCAAGTAAAAGCCATTGGTGCTGGGCTGGAACATCAGTTTGGTATGGCCATTTCTAATCAAGCAAGATCTCTGGATGTTGGATCCTCTAGGGCTTCCAGAAAGGTAGATGGAGTGCAACCTGAGGTATTGGTTCGGCAAATCTGTACATTTCTACAACAGAGAGGTGGTCGTTCTGATTCATCCAGCATAGTCCAGCATTTTAAGGACAGGATACCCTCAACAGATCTTGCGCTGTTCAAGAATCTGTTAAAGGAAATAGCTACTCTGGAAAAAGGACCAGATGGATCACATTGGATTCTGAAGCCTGACTATCAAGAATAG 3675 0.4131 MEEDEDRILLNSLGVESANHECIERNVLAEAQNDVVTITEADGSSKEESTQKYENADPSSISKAELYHKLRAVDFEINAVASTIQEVRNIDSNGDCIDGGDSYGDLGTTKDASSNDLNIQHVLAADRLESLKKTKAQLEKELSDLFNEKPSKSIDQDKENEIFNLVKEDRRSKRKPKEVKSLPKGSGKRHKTVSLNDDVDFDAVLDAASAGFVETERDHLVRKGILTPFSNLKGFERRFQQSEASSSYGASQEQKTDDLTSSSLERAARSISEAARARPTTKLLESEDLPKLDAPTHPFVRLKLPLKLPQSQERELEKKNNLKRQKRRPLPGRKWTKRVSSEEIHSRETEEASGCLDPSSCENLDAQDFECADHEPSFITLEGGLKIPDNVFDALFDYQKIGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIIICPVTLMRQWKREVKKWYPKFHVELLHDSARDPDVRKKQSKCDESDYDSNSSSDSDYETNIQSKSTRKWESLISRVMRTESGLLITTYEQLRILRDLLLDIEWGYAILDEGHRIRNPNAEITLVCKQLQTVHRIIITGSPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPIALGGYANASPLQVSTAYRCAVMLRDLIMPYLLRRMKADVDAHLPKKTEHVLFCSLTTEQVSAYRAFLASSEVEQILDGRKNSLYGIDVMRKICNHPDLLEREHAYGNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIIENFLTTSGHNYRRMDGATPIKQRMALIDEFNESREVFVFLLTTKVGGLGTNLTGADRVIIFDPDWNPSTDVQARERAWRIGQTQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFKLNVDDKSGPTETSTIFGQISEDVNIVGANEDKQDEHKHPQTAEPAFDDVIVNRDGRSKTRSIKGKGKEETDRLDEADEETNILKSLFDAHGLHSAVNHDLIMNANDEEKMRLEEQASQVAQRAAEALRQSRKLRSRDSITVPTWTGRSGTAGAPSSFRRKFGLTVNSQLVSNCKESGELTGDGTRKLNGSAAGASSGKALSSAELLAQIRGNQVKAIGAGLEHQFGMAISNQARSLDVGSSRASRKVDGVQPEVLVRQICTFLQQRGGRSDSSSIVQHFKDRIPSTDLALFKNLLKEIATLEKGPDGSHWILKPDYQE 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0639 1224 MobiDBLite consensus disorder prediction 311 357 - -
Acco06g0639 1224 Pfam Helicase conserved C-terminal domain 745 852 IPR001650 -
Acco06g0639 1224 Gene3D - 662 949 IPR027417 -
Acco06g0639 1224 Pfam SNF2-related domain 398 720 IPR000330 GO:0005524|GO:0140658
Acco06g0639 1224 MobiDBLite consensus disorder prediction 243 268 - -
Acco06g0639 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 658 911 IPR027417 -
Acco06g0639 1224 CDD DEXHc_ERCC6 395 605 - -
Acco06g0639 1224 SMART ultradead3 391 614 IPR014001 -
Acco06g0639 1224 MobiDBLite consensus disorder prediction 1082 1101 - -
Acco06g0639 1224 MobiDBLite consensus disorder prediction 335 352 - -
Acco06g0639 1224 Coils Coil 1008 1035 - -
Acco06g0639 1224 CDD CSB_WHD 1154 1223 - -
Acco06g0639 1224 Coils Coil 121 148 - -
Acco06g0639 1224 FunFam Protein CHROMATIN REMODELING 8 373 655 - -
Acco06g0639 1224 Gene3D - 377 655 IPR038718 -
Acco06g0639 1224 MobiDBLite consensus disorder prediction 243 290 - -
Acco06g0639 1224 FunFam DNA excision repair protein ERCC-6 663 941 - -
Acco06g0639 1224 MobiDBLite consensus disorder prediction 166 193 - -
Acco06g0639 1224 PANTHER SNF2/RAD54 FAMILY MEMBER 158 1206 - -
Acco06g0639 1224 SMART helicmild6 769 852 IPR001650 -
Acco06g0639 1224 MobiDBLite consensus disorder prediction 484 508 - -
Acco06g0639 1224 CDD SF2_C_SNF 738 863 - -
Acco06g0639 1224 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 407 606 IPR014001 -
Acco06g0639 1224 MobiDBLite consensus disorder prediction 39 58 - -
Acco06g0639 1224 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 743 902 IPR001650 -
Acco06g0639 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 656 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0639 Acco-ChrAcco06 4132519 4138712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0639 738 905 RAD5 or RAD16-like Gene Family AT5G22750 33.333 2.82e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco06g0639 SNF2_N 5e-62 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g0639 06 4132519 4138712 Acco06g0639 06 4132519 4138712 ECH