Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0622 ATGGATTTACTCGAGCTCCAAAACCAGGAGCTATACTCTGCAAATTTCAATTTCCCTGTTTCTGAAGAATCATTGAGCTGGCAAGATTTCTTCAACTTCAGCTCCGATGACTACTCATCCTCCCAATCCAATTCTGCAGGAGGAATCGAATTTCAAGAAGTGTCATCACAAGTGCGAGAGGCAAATAATGCTAACGCATACACAATATCGGCAACACCAGAATATCAGAGCAGTGGGAGTAATAAGAAAGAAAGGAGGCCGTACAGGGGAGTGAGGAGGAGGCCGTGGGGGAAATTCGCGGCGGAGATAAGAGACTCGACGAGGAATGGGGTGAGAGTGTGGATCGGGACGTTTGATACGGCGGAGGAGGCGGCGTTGGCGTACGACCAGGCGGCTTACTGCATGAAGGGGTCGATGGCGGTGCTGAATTTCGCGGAGCAAGTGGTGAGGGAGTCGCTAGAAAGAATGGGGAGTAAGCCATGGGAGGAAGGTTCGTCTCCTGTGTTGGCCCTCAAGAGAAAGCATTCCTTGAGATCAAGGTCGTCGTCGTTATCGTCTTCTTCCTCCAGCCATAAAAGGCCCAGACAGAATAAAAGCTCCTCCACCAGGGAGACACAAGCACCAAACAACGTGCTCGTCTTGGAGGATTTGGGGGCTGAATATTTGGAGCATCTCTTGAGCTTGACCTCTTCTGACTTTGTTTCATTTTCATAG 714 0.4986 MDLLELQNQELYSANFNFPVSEESLSWQDFFNFSSDDYSSSQSNSAGGIEFQEVSSQVREANNANAYTISATPEYQSSGSNKKERRPYRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEEAALAYDQAAYCMKGSMAVLNFAEQVVRESLERMGSKPWEEGSSPVLALKRKHSLRSRSSSLSSSSSSHKRPRQNKSSSTRETQAPNNVLVLEDLGAEYLEHLLSLTSSDFVSFS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0622 237 SUPERFAMILY DNA-binding domain 88 145 IPR016177 GO:0003677
Acco06g0622 237 SMART rav1_2 87 151 IPR001471 GO:0003700|GO:0006355
Acco06g0622 237 MobiDBLite consensus disorder prediction 172 209 - -
Acco06g0622 237 FunFam Ethylene-responsive transcription factor 2 86 146 - -
Acco06g0622 237 ProSiteProfiles AP2/ERF domain profile. 87 145 IPR001471 GO:0003700|GO:0006355
Acco06g0622 237 PANTHER DNA-BINDING DOMAIN 52 227 IPR044808 GO:0003700|GO:0009873
Acco06g0622 237 PRINTS Ethylene responsive element binding protein signature 88 99 IPR001471 GO:0003700|GO:0006355
Acco06g0622 237 PRINTS Ethylene responsive element binding protein signature 111 127 IPR001471 GO:0003700|GO:0006355
Acco06g0622 237 MobiDBLite consensus disorder prediction 180 209 - -
Acco06g0622 237 CDD AP2 95 147 IPR001471 GO:0003700|GO:0006355
Acco06g0622 237 Gene3D AP2/ERF domain 87 147 IPR036955 GO:0003700|GO:0006355
Acco06g0622 237 Pfam AP2 domain 88 137 IPR001471 GO:0003700|GO:0006355
Acco06g0622 237 MobiDBLite consensus disorder prediction 69 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0622 Acco-ChrAcco06 4017876 4018589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0622 84 226 AP2-EREBP Transcription Factor Family AT2G31230 58.125 1.20e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco06g0622 AP2 2.1e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1753 02 13609374 13609982 Acco06g0622 06 4017876 4018589 CCT
Acco06g0622 06 4017876 4018589 Acco06g0622 06 4017876 4018589 ECH