Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0613 ATGGCTTCTTCTGGCTCTACCTCTGCTTCTCCCTGCGGGGCTTGCAAGTTCCTCCGAAGAAAGTGCGCCGCCGATTGTATATTTGCGCCTTACTTCTGCTCCGATCAAGGCCCTGCCACCTTTGCCGCCATTCATAAGGTGTTTGGCGCCAGTAATGTTTCTAAATTGCTCCTACACATCCCCGCTCGTCATCGCTGTGAGGCCGTCCTCACTATTGCTTATGAGGCCCAGGCTCGGATTAGAGACCCTGTTTATGGTTGTGTCGCTCACATTTTTGCCTTGCAACAACAGGTGGCGTGCTTGCAGGCCCAACTGATGCAAGTGAAGGCTCAACTGGCGCACAAGAACCTAGAAACCCAGTGGGCACCAGGGATTCATCATAATATGGCGGGAGGTCATCAGGCAATGAATACTTACAGTATGAACCCTATTTCTCCTCAGTGTTCTCTTGAGTCGATTGACCACAACATCGGCGATGGAATCAACGTGCAAGATATACGAAGTATAGAGGAATTTCCATTCCCTAAAAGAAGATCTTATAACAATGATTTGGGCGAACTCCATCAGCTTGCACTCAGGATGATGAGGAACTAG 594 0.4933 MASSGSTSASPCGACKFLRRKCAADCIFAPYFCSDQGPATFAAIHKVFGASNVSKLLLHIPARHRCEAVLTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHKNLETQWAPGIHHNMAGGHQAMNTYSMNPISPQCSLESIDHNIGDGINVQDIRSIEEFPFPKRRSYNNDLGELHQLALRMMRN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0613 197 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
Acco06g0613 197 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Acco06g0613 197 Coils Coil 91 118 - -
Acco06g0613 197 PANTHER LOB DOMAIN CONTAINING PROTEIN 7 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0613 Acco-ChrAcco06 3940163 3940853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0613 1 197 AS2 family AT2G42430 52.209 5.86e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Acco06g0613 LOB 4.5e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1779 02 13903025 13911685 Acco06g0613 06 3940163 3940853 CCT