LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco06g0596	ATGGTATGTGTGATTTCTCAGAGCGAAGCAAAGTCTTCTCTTTTGCACCTTTCTGTCTCAATCCGATGGAAGAAGAATCTAGGGTTTGATAGTACCAAGAACATCAAGCTAGAGCCTAGTATGGAGGAGGTTGAAGAAGCTAACAGAGCAGCTGTTGAAAGCTGCCATAGAGTTGTGAGTCTGTTGTCTCAGCGCCAGGATCAGATTCCTTATGGCAAGTTAATGGTGGAAACTGTCGAGGCTGTGTCCGGGTTCAAGAAAGTTGTTTCATTGCTCAATAATGGTTTGGGTCATGCAAGAGTCAGGAAGCACAGAAAACTTCAAATCCCTTTTTCTCAAAGTATTCTCTTGGACAATCCATATTTCAAATCAAACCATTGTCTCAAAAATCTGCTGTCTCTGCAACCCATTTCTTCGGACTATTCCATTCAGGAGTTGGGATCAAACATTGGAAACTCGCTGTCTCTGGGAAAACCATCTTTGGAATGGAGTTCAAATGGCAAAAATCCCCTACACCTTACCCCTCCAGCGTCGCCGCCGCGTTATCACTTACTTCAGCAGCAGCAAAGAATATTGCTACAGCAGCAACAAATGAAACACCAAGCAGAAATGGTGTTTCGAAAGAGCAATAGTGGAATCAGTCTGAATTTTGATAGCTCTAGCTGCACACCCACTATGTCATCTACTAGGTCTTTCATTTCTTCTTTAAGCATAGATGGAAGCGTAGCTAACTTGGATGGGACTGGGAGTGCCTTCCATTTACTTGGAGCCCCACACTCCTCAGATCAGAATGCACAACACCACAGGAGAAAGTGTTCTGGCGGAGACGAAGGAAGTGCGAAATGTTGGAGCAGTACAAGATGCCACTGCTCAAAGAAGAGAAAGAATAGAGTAAAGAGGTCAATCAAGGTGCCTGCTATTAGCAACAAGCTTGCTGATATACCCCCTGATGATTATTCATGGAGAAAATATGGGCAGAAGCCAATCAAAGGCTCTCCTCATCCAAGAGGATACTACAAGTGCAGCAGCATGAGAGGGTGCCCTGCTAGGAAGCATGTAGAGAGGTGCTTGGAAGACCCTTCAATGCTAATTGTTACATATGAAGGTGAGCATAACCACCCTAAAATATCAGCTCAGTCTGCAAATGCATGA	1152	0.4427	MVCVISQSEAKSSLLHLSVSIRWKKNLGFDSTKNIKLEPSMEEVEEANRAAVESCHRVVSLLSQRQDQIPYGKLMVETVEAVSGFKKVVSLLNNGLGHARVRKHRKLQIPFSQSILLDNPYFKSNHCLKNLLSLQPISSDYSIQELGSNIGNSLSLGKPSLEWSSNGKNPLHLTPPASPPRYHLLQQQQRILLQQQQMKHQAEMVFRKSNSGISLNFDSSSCTPTMSSTRSFISSLSIDGSVANLDGTGSAFHLLGAPHSSDQNAQHHRRKCSGGDEGSAKCWSSTRCHCSKKRKNRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPKISAQSANA	383

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco06g0596	383	ProSiteProfiles	WRKY domain profile.	310	376	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco06g0596	383	Pfam	Plant zinc cluster domain	269	313	IPR018872	-
	Acco06g0596	383	MobiDBLite	consensus disorder prediction	259	283	-	-
	Acco06g0596	383	FunFam	WRKY transcription factor 65	299	376	-	-
	Acco06g0596	383	SUPERFAMILY	WRKY DNA-binding domain	313	375	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Acco06g0596	383	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	42	380	IPR044810	GO:0003700
	Acco06g0596	383	SMART	WRKY_cls	315	375	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco06g0596	383	Pfam	WRKY DNA -binding domain	317	374	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco06g0596	383	Gene3D	WRKY domain	299	375	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco06g0596	Acco-ChrAcco06	3780232	3782312	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco06g0596	41	380	WRKY Transcription Factor Family	AT2G30590	55.526	3.83e-121	353

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Acco06g0596		WRKY	1.8e-26	CL0274