Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0593 ATGATACGTAGGCGAGAGGGGGGCGATTGTTCTGATAACGAAACGATGGTGAATCAGGTAGTAAAAGTGAGGAGGGAAACTCTTGTAGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGAGACGCCACCACCATATCTGAATGTCTTCATACGTTTTGCAGGGAATGCATCTATGATAAAATTACAGATGAGGAATTAGAACACTGTCCAATCTGTAATATTGATTTGGGCTGTGTTCCGCTTGAGAAATTGAGGCCAGACCACAATTTACAAGATGTAAGAGCTAAAACTTTCCCTTTGAAGAGAAGAAAGGCAAAAACACCTGAGGCTGTTCCATCTATAACAATACCAGCTAGAAGAAAGGAGAGATCACTTTCATCTTTGGTTGTCAGCACTCCCAGAGTATCAACACAGGTAACAATCACTGGGAGAAGAACAAAACCAACTAGAAAGGCCAGTGGTCCGCGAGCCTCCAGTTTTTCCATTGAAAAGCCTGTTAAAAAAGAGGAATCAGTAGAAGATCATACCGAGAGTTCAAGCTCCCCAGACACTTTGAACAAGTTTACTCAAAATACCAAACAGAATTTGTCCCCTCTTGAATCTAACCAATCCTTACGCACCAAAGAGGGAGATAATGGAGCAGAACCTTGGGAAGTGAAATTGGATCTTTGGAAACCTTTGAATTGCTTAGTAGAAGTGGCAAGCAGAAGTAAATCTTTCAAGTCTAGTGTGCAAGGGTCTGATGCCAAACAAGAACCCGTGCAAATAAATGAGAATGACTCTCAGGTGCAAAAATCCAAAAATAAAGAGAATAAGCGCAAAGCCAAAGTTGAGCCTGAAAAAGTTGACGCAGATCCTACCTCTTTAAATACAGCAAAGCCTAATAAGTCACGCAAAGTTCGTCGTAAAAGGGAGCCTCTTTTTGGAGAACCAGGCATATCACCTCAAGCTGTTCTGGATGCAAACAGTGCTACATTCAAAAGGAGAACTGGTCCACTTTGGTTTGCCTTAGTAGCTTCTGAAGATCAGGAAGGAGATGCACCCATGGCCCAAATTCCTGCAAGTTATTTAAGAATAAAGGATGGAAGTTTACCTGTGTCATTTATCCACAAATACCTAATGAAGAAACTAGAGCTGAGCAGTGAAACAGAGGTTGAGATTAAATGTATGGGACAACCAGTGGTCCCTACGTTGCAACTATGTAGTTTGGTTGACTTGTGGCTCCAGACAGCATCTACGACACAGCGAATTCCAGCAACTATTGGGTCCTCAGCCAAGGATTTTGTAATGGTTCTAGCTTATACGCGCAAGGTTCCACACCATTGA 1332 0.4242 MIRRREGGDCSDNETMVNQVVKVRRETLVACMTCPLCNKLFRDATTISECLHTFCRECIYDKITDEELEHCPICNIDLGCVPLEKLRPDHNLQDVRAKTFPLKRRKAKTPEAVPSITIPARRKERSLSSLVVSTPRVSTQVTITGRRTKPTRKASGPRASSFSIEKPVKKEESVEDHTESSSSPDTLNKFTQNTKQNLSPLESNQSLRTKEGDNGAEPWEVKLDLWKPLNCLVEVASRSKSFKSSVQGSDAKQEPVQINENDSQVQKSKNKENKRKAKVEPEKVDADPTSLNTAKPNKSRKVRRKREPLFGEPGISPQAVLDANSATFKRRTGPLWFALVASEDQEGDAPMAQIPASYLRIKDGSLPVSFIHKYLMKKLELSSETEVEIKCMGQPVVPTLQLCSLVDLWLQTASTTQRIPATIGSSAKDFVMVLAYTRKVPHH 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0593 443 SUPERFAMILY RING/U-box 28 95 - -
Acco06g0593 443 CDD RING-HC_PCGF 32 75 - -
Acco06g0593 443 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Acco06g0593 443 MobiDBLite consensus disorder prediction 164 179 - -
Acco06g0593 443 Pfam Zinc finger, C3HC4 type (RING finger) 34 74 - -
Acco06g0593 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 120 IPR013083 -
Acco06g0593 443 SMART ring_2 34 74 IPR001841 -
Acco06g0593 443 MobiDBLite consensus disorder prediction 138 158 - -
Acco06g0593 443 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 17 439 IPR044807 GO:0004842
Acco06g0593 443 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Acco06g0593 443 MobiDBLite consensus disorder prediction 180 211 - -
Acco06g0593 443 MobiDBLite consensus disorder prediction 240 264 - -
Acco06g0593 443 MobiDBLite consensus disorder prediction 265 285 - -
Acco06g0593 443 MobiDBLite consensus disorder prediction 240 316 - -
Acco06g0593 443 MobiDBLite consensus disorder prediction 138 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0593 Acco-ChrAcco06 3758652 3764170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0593 18 362 C3H Transcription Factor Family AT2G30580 54.624 2.62e-116 342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1799 02 14142040 14147287 Acco06g0593 06 3758652 3764170 CCT