Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0587 ATGGGATTCGAGGAAACGGAGCTGAGGCTTGGACTGCCTGGTGCCGAAGCTGCGAGGAAGAGAGGTTTCTGTGAGACCGAGACGACTAAGGACAATAATAACGGCACTGTGGATTTGATGCTCAATCTCTCTTCTTCCAAAGAAGCTGATCATTCCACCGACAAGCCCAAGGAGAAGACTCTTCTTCCTGCCGATCCCGCCAAGCCTCCTGCCAAGGCACAAGTGGTGGGATGGCCACCGGTGAGATCGTTCCGGAAGAACATGTTAGCACAGAAGAAGAGCGGAGAAGAGAGTGATCTGAAAAGCAGCCCTAATGGAAGCTTCGTGAAAGTGAGCATGGACGGAGCTCCATATCTTCGCAAGGTGGACCTCAAGATGTACAAGAGCTATCAAGACCTCTCTGATGCCTTGGGCAACATGTTCAGCACCTTCACCATTGGGAACTGTGGATCCCAAGGACTGAAGGATTTCATGAATGAGAGCAAGCTGATGGATCTGTTGAACAGCTCCGACTATGTCCCGACCTATGAGGACAAGGATGGCGACTGGATGCTTGTCGGTGATGTCCCTTGGGAGATGTTCGTTGAATCCTGCAAGCGCTTGCGTATTATGAAAGGAAAGGAAGCCATTGGGCTTGCACCAAGGGCCATGGAGAAGGTCAAAAACCGGAGCTAG 675 0.5141 MGFEETELRLGLPGAEAARKRGFCETETTKDNNNGTVDLMLNLSSSKEADHSTDKPKEKTLLPADPAKPPAKAQVVGWPPVRSFRKNMLAQKKSGEESDLKSSPNGSFVKVSMDGAPYLRKVDLKMYKSYQDLSDALGNMFSTFTIGNCGSQGLKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKVKNRS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0587 224 ProSiteProfiles PB1 domain profile. 106 206 IPR000270 GO:0005515
Acco06g0587 224 Pfam AUX/IAA family 5 215 IPR033389 -
Acco06g0587 224 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 211 IPR003311 GO:0005634|GO:0006355
Acco06g0587 224 MobiDBLite consensus disorder prediction 23 75 - -
Acco06g0587 224 FunFam Auxin-responsive protein 101 216 - -
Acco06g0587 224 SUPERFAMILY CAD & PB1 domains 103 205 - -
Acco06g0587 224 Gene3D - 101 218 - -
Acco06g0587 224 MobiDBLite consensus disorder prediction 48 62 - -
Acco06g0587 224 MobiDBLite consensus disorder prediction 28 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0587 Acco-ChrAcco06 3716974 3719094 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0587 101 214 B3 DNA Binding Superfamily AT4G23980 31.579 4.22e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco06g0587 AUX_IAA 5.2e-83 CL0072