Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0566 ATGTTTTCTTCAGCCATGTCCAATTCTGCTTCTTTGTCTGAAGAAGCCACTGTCTCTTTCTCTTCCGGTACTAGACTCCATAACTTCACCGAACCAAGTCAAATCGTTTCAACAACTATCCCTGACCCTCCTCAGCAGCCTCAAAAGATAAAGAAAAAAAGAAGCCTCCCTGGTAATCCAGACCCAGATGCTGAGGTGATTGCGTTATCCCCAAACACCCTTTTGGCCACCAATAGATATGTGTGTGAAATCTGCAACAAGGGTTTTCAGAGAGATCAGAACCTTCAGCTACACAGGAGAGGGCATAACCTTCCGTGGAAGCTGAAACAAAGGAACAGCAAGGAGGTGAAAAAGAGAGTCTATGTTTGCCCCGAGCCTTCTTGTGTTCATCACAATCCCTCCAGAGCTCTGGGCGATCTCACGGGTATTAAGAAACACTATTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTCAAAAGTGCTCCAGAATTTACGCGGTTATGTCTGATTGGAAAGCTCACTCCAAAACCTGTGGAACTAGAGAATATAGATGTGATTGCGGAACCGTTTTCTCCAGGAAGGACAGCTTTATAACTCATAGGGCATTTTGTGATGCCTTGGCTGAAGAAAGTGCAAGACTGGCTGCTAATCAGCTGGCTTCCACAAACCCAATGTTATTTCAATCTCTCTTCCCTTACCAAAATCAAATCGTGATGAATCCCTGGGACCCATCTTCTCAAGAAAACCCTAACCCTAATAACATGGACGCCGTCCAAATCAAGATGGAAACTCAGAGTTTTGAGGTCCCATGCCTCTCTTCTCCGGCGCCATTTCTTCAAGTGCAGCAGCAGAATCAGAAGAACATGATAAACCCTTTCTTGGGAACTGTCCATGTGCCCTCAAACGCCGCCACGTCGGCCCACCTGTCAGCCACTGCGCTCCTCAGAAAGGCTGCAACTGTGGGCTTCGCTGCCATCACAGCAGGCCCAGGTACTGCCGCTGCCGCTGATGGTGGTAGGCCCCAGGCAACGATATCTCACGTGACTCAGCCAAGCACGGGCGAGTTTGGACATCTGACTCAGCAGACCGACTTTGGAGGGCTCATGACCCGGAATCAGAGTGAACGTCTGACCAGGGACTTCCTCGGCCTGACCGCCTATGTAGATGGCGGAAGAAACGGTGGTTCCGTTGACGTCGGCCTGAACGCGAAGGATATGCTGGTGTTCACTGGGGGCGTAGGGTATGATGATTCGTATCTTCCATACGATCACCATTATCACTCACTCTTCAAGTCCCAACAAGATTTTGGATTCTTTGGGACTGTCACTGCCCCGGCGACGTGGGGGAGCTCTTGA 1356 0.4941 MFSSAMSNSASLSEEATVSFSSGTRLHNFTEPSQIVSTTIPDPPQQPQKIKKKRSLPGNPDPDAEVIALSPNTLLATNRYVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKRVYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCQKCSRIYAVMSDWKAHSKTCGTREYRCDCGTVFSRKDSFITHRAFCDALAEESARLAANQLASTNPMLFQSLFPYQNQIVMNPWDPSSQENPNPNNMDAVQIKMETQSFEVPCLSSPAPFLQVQQQNQKNMINPFLGTVHVPSNAATSAHLSATALLRKAATVGFAAITAGPGTAAAADGGRPQATISHVTQPSTGEFGHLTQQTDFGGLMTRNQSERLTRDFLGLTAYVDGGRNGGSVDVGLNAKDMLVFTGGVGYDDSYLPYDHHYHSLFKSQQDFGFFGTVTAPATWGSS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0566 451 FunFam protein indeterminate-domain 5, chloroplastic-like 134 213 - -
Acco06g0566 451 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Acco06g0566 451 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Acco06g0566 451 Pfam Zinc-finger of C2H2 type 80 102 - -
Acco06g0566 451 Gene3D Classic Zinc Finger 79 103 - -
Acco06g0566 451 MobiDBLite consensus disorder prediction 32 65 - -
Acco06g0566 451 Gene3D Classic Zinc Finger 115 204 - -
Acco06g0566 451 SUPERFAMILY beta-beta-alpha zinc fingers 79 176 IPR036236 -
Acco06g0566 451 FunFam protein indeterminate-domain 12-like 59 127 - -
Acco06g0566 451 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 387 IPR031140 -
Acco06g0566 451 SMART c2h2final6 121 151 IPR013087 -
Acco06g0566 451 SMART c2h2final6 80 102 IPR013087 -
Acco06g0566 451 SMART c2h2final6 156 176 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0566 Acco-ChrAcco06 3551756 3554393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0566 46 440 IDZ Gene Family AT4G02670 51.597 2.24e-122 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco06g0566 zf-met 0.0029 CL0361