Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0565 ATGGATTACCCGTATCCAGTAAAAGAAGAGTACCTGGAAGCGACTTCATCTCATTCAGAAGGTGAAGCATCAACAATTCCCCCTCCGCAGCCAATGGAGGGGCTACACGAGCTGGGGCCACCACCATTTTTGACCAAGACATTCGACGTGGTGGACGACCCAATTACCAATCATATGGTTTCTTGGAGCAGAGGGGGCAATAGTTTCGTGGTTTGGGATCCACATGCCTTCTCTACGAGTCTCCTTCCCAGATACTTTAAGCACAACAATTTCTCAAGCTTTGTCAGGCAATTGAACACTTATGGATTCAGGAAAATTGATCCAGACAGATGGGAGTTTGGAAATGAAGGATTTCTGAGAGGCCACAGGCATCTTCTGAGGAACATAAGGAGAAGGAAGGCACCTGCTAATTTGAGTCTTTCCCAACAAGCACAACCGCAGGGTTATTGTGTTGAGGTAGGAAGTTTTGGACTGGACGAAGAAATCGATCATTTGAGGCGGGACAAACAGGTGTTAATGATGGAGTTGGTGAAGCTTAGGCAGCAGCAACAGAACACTAGATCATACCTTCAGGCAATGGAACAAAGGTTACAGGGCTCTGAAAAAAAACAGCAACAGATAATGGCTTTCCTAGCCAGAGCCATGAAAAATCCAGCCTTTCTCCAGCAACTACTCCAACAGAAAGACAAGAGAAAGGAGCTTGAAGAAGCCATAACTAAGAAGAGGAGAAGGCCAATTGAGCAAGGACCAAGTTGTGTTGGGGAATCAAGCAGTGGAGGTGAAGCAATGAACGCTATAAAAGCTGAGCCTTTAGAATTTAGTGACTATGGCTATGAAGTGTCAGAACTGGAAACGTTAGCCATGGAAATGCAGGGTTATGGTAGGGGGAGAAGAGAACAGGAGGCGTCAGAAGAACCACGGGGCAGGCTGGGAAAAGAACTTGATGAGGGTTTCTGGGAAGAACTGTTCAGTGAGGATTTTGAGGATGAAATAGACATTCCAAGCCCTGATGGTGAAGATGAAGATGTCAATGTCTTGGCCAATCGCTTAGGCTACTTGGTTTCGAGTCCTAAGTTGCAGCTGGTGCTTGCGCAAGAAATCTGTGGTAGTCATAGCGTTCATAATAATGATCTCTAA 1137 0.4582 MDYPYPVKEEYLEATSSHSEGEASTIPPPQPMEGLHELGPPPFLTKTFDVVDDPITNHMVSWSRGGNSFVVWDPHAFSTSLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFGNEGFLRGHRHLLRNIRRRKAPANLSLSQQAQPQGYCVEVGSFGLDEEIDHLRRDKQVLMMELVKLRQQQQNTRSYLQAMEQRLQGSEKKQQQIMAFLARAMKNPAFLQQLLQQKDKRKELEEAITKKRRRPIEQGPSCVGESSSGGEAMNAIKAEPLEFSDYGYEVSELETLAMEMQGYGRGRREQEASEEPRGRLGKELDEGFWEELFSEDFEDEIDIPSPDGEDEDVNVLANRLGYLVSSPKLQLVLAQEICGSHSVHNNDL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0565 378 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 255 IPR027725 -
Acco06g0565 378 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco06g0565 378 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco06g0565 378 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco06g0565 378 Gene3D - 36 133 IPR036388 -
Acco06g0565 378 Coils Coil 162 182 - -
Acco06g0565 378 SUPERFAMILY "Winged helix" DNA-binding domain 39 132 IPR036390 -
Acco06g0565 378 Coils Coil 224 244 - -
Acco06g0565 378 FunFam Heat shock transcription factor 1 36 133 - -
Acco06g0565 378 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco06g0565 378 SMART hsfneu3 39 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco06g0565 378 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0565 Acco-ChrAcco06 3539836 3541864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0565 24 356 HSF AT3G22830 54.201 1.72e-129 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Acco06g0565 HSF_DNA-bind 1.8e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1829 02 14413856 14415341 Acco06g0565 06 3539836 3541864 CCT