Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0534 ATGGCACACTTTTATAGGTTACCGGGGAAAGCATATGCGAGGAGGCAGCATGTATGGCTTGCCGGTGCAAACGAGGTGGACAGCAAAACATTTTCAAGAGCTATTCTCGCCAAGACCGTGGTGTGCATACCTCTGTTGGACGGCGTCGTAGAGTTTGGCACAACCGATAAGGTTCAGGAAGACCTTCATTTTATCCAACACGTAAAGAGCTTCTTCATAGATCACCAGCGGCAGCACCACCCTCCTCCGCCGAAGCCCGCCCTCTCTGAGCACTCAACCTCCAACCCCACTACCTCTTCAGACCACTCCCGCTTCCAGTCTACGCCCATCCCCGCCGCCATGTACTCCGCTGTGGACCCATCACCCGCTACCCCACCCGCTCCTAACAACCACATCAATGAAGATGACGACGAGGATGATGAAGAAGAGGCCGAGTCCGACTCCGAGGCAGAAACAGACCGGAACAGCGGCCCAACGTCTATGCCGGAGGCTTCAGGCGTGGCAGTTGCCACTGCAGCAGAACCAAGCGAGTTAATGCAGCTGGAGATGTCGGAGGATATCCGGGTAGGATCACCGGACGATGGCTCCAACAATCTCGACTCAGATTTCCATATGCTGGCGGTGAGCCACCCAGCGGATCACGAGCGACGAGCGGACTCGTACAGGGCCGAGTCGACCCGGAGGTGGGCCGAACCAATGCTCCAACTACCAGCTTCAGAAGGCGCTCACCTAGAAGAGCTCACACAAGAGGACACCCACTACTCTCAAACAGTGTCCACCATCCTCCACAATCAGTCTATCCGGTGGGCCGAATCTCCCTCCGTCGACTACAAAACTTACTCCTCCCAATCTGCTTTTGCCAAGTGGAACACCCGTTCCGACCACCACCACCTCCTCCTCCAGGCGTCCCCCGACGGCACCTCTCAGTGGCTCCTCAAGTACATTTTGTTCACCGTTCCTTTCCTTCACGCCAAGTACCAAGACGACAACCCGCCCACGCCCCGTGATGGCGCCGATCCCGTCACGCGCCTCCGTGGAAGGGGAACGCCGCAGGATGAGTTAAGCGCCAACCACGTACTGGCCGAGCGACGCCGCCGCGAGAAGCTCAACGAGAGGTTCATCATATTGAGATCCCTCGTGCCCTTCGTCACAAAAATGGACAAGGCATCCATATTAGGGGACACCATCGAGTATGTGAAACAGTTGCGCAAAAAGATCCAAGATCTGGAGGCGTGTAACCGCCAGATGGAAGCAGAGCAACAACAGTCAAAGGAGCAACAGAAGAGCTTGACGAGAGTGGGGTCGGACAAGAGGAAGATGAGGATCGTGGAGGGGAGCGGAGGGATGAGGAAGCCGAAGTCAGTGGAGGCGTCACCGCCGCCATCGCCGTCGGGAGTGGTGACGTCGGTGCAAGTGTCGATCATAGAGAGTGATGCATTGTTGGAATTGGAGTGCGAGAACAGGGAGGGGTTGTTGCTGGATGTGATGCAAATGCTGAGAGAGATGAGGATAGAGGTGACTACGGTGCAGTCGTCGCTGAACAACGGGGTGTTCGTGGCGGAGCTAAGGGCGAAGGTGAAGGAAAATCCGAACGGAAAGAAGACCAGCATAGTTGAAGTGAAGAAGGCCCTCAACCAAATCATACCCCACAATGATTGA 1659 0.56 MAHFYRLPGKAYARRQHVWLAGANEVDSKTFSRAILAKTVVCIPLLDGVVEFGTTDKVQEDLHFIQHVKSFFIDHQRQHHPPPPKPALSEHSTSNPTTSSDHSRFQSTPIPAAMYSAVDPSPATPPAPNNHINEDDDEDDEEEAESDSEAETDRNSGPTSMPEASGVAVATAAEPSELMQLEMSEDIRVGSPDDGSNNLDSDFHMLAVSHPADHERRADSYRAESTRRWAEPMLQLPASEGAHLEELTQEDTHYSQTVSTILHNQSIRWAESPSVDYKTYSSQSAFAKWNTRSDHHHLLLQASPDGTSQWLLKYILFTVPFLHAKYQDDNPPTPRDGADPVTRLRGRGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRKKIQDLEACNRQMEAEQQQSKEQQKSLTRVGSDKRKMRIVEGSGGMRKPKSVEASPPPSPSGVVTSVQVSIIESDALLELECENREGLLLDVMQMLREMRIEVTTVQSSLNNGVFVAELRAKVKENPNGKKTSIVEVKKALNQIIPHND 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0534 552 Coils Coil 399 429 - -
Acco06g0534 552 MobiDBLite consensus disorder prediction 326 359 - -
Acco06g0534 552 Gene3D - 353 429 IPR036638 GO:0046983
Acco06g0534 552 PANTHER TRANSCRIPTION FACTOR TT8 6 550 - -
Acco06g0534 552 MobiDBLite consensus disorder prediction 75 169 - -
Acco06g0534 552 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 353 402 IPR011598 GO:0046983
Acco06g0534 552 Gene3D - 478 548 - -
Acco06g0534 552 MobiDBLite consensus disorder prediction 133 149 - -
Acco06g0534 552 MobiDBLite consensus disorder prediction 417 466 - -
Acco06g0534 552 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 424 IPR036638 GO:0046983
Acco06g0534 552 Pfam Helix-loop-helix DNA-binding domain 356 403 IPR011598 GO:0046983
Acco06g0534 552 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 72 IPR025610 -
Acco06g0534 552 MobiDBLite consensus disorder prediction 430 446 - -
Acco06g0534 552 MobiDBLite consensus disorder prediction 90 110 - -
Acco06g0534 552 SMART finulus 359 408 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0534 Acco-ChrAcco06 3306429 3309637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0534 7 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 70.652 2.00e-34 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco06g0534 bHLH-MYC_N 1e-16 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g0534 06 3306429 3309637 Acco06g0534 06 3306429 3309637 ECH