Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0487 ATGAGATCGCGGTCACAGTCACACCGCGATGCTGGGGATCATGTCTTGGTTGGCGATGGTTTGAGGCAGAGTTGTTGGGCTAATATGCCCCCAGAGCTTCTGAGGGATGTGTTAATGAGGATTGAGGCTTCTGAAGATACGTGGCCAGACCGAAAACATGTGGTTGCTTGTGCTGGTGTCTGCCGTAGTTGGAGAGGAATCATGAAAGAAATTGTGAAATCTCCTGAATTATCTGGCAAGCTAACGCTCCCAATCTCCTTGAAGCAGCCTGGTCCAAGGAACTCTCTTCTTCAGTGCTATATTAAACGTCATCGCAGTAATCAAACGTATTATCTGTACCTCAGTTTAAACCAAGCTTCAGTCGATGATGGCAAGTTCCTTCTTGCTGCACGGAAATGTCGACGTCCTACCCATACAGACTATATCATTTCTATAAACTGTGAAGATGTATCAAGAGGGAGCAGCACTTACATTGGGAAGTTGAGGTCAAATTTTCTGGGTACCAAATTCACAGTGTATGATGCGCACCCTCCAATTTGTGGTACCAGAGTGACTAAATCTCGTTCAACTAGACCAGTTAGTCTCAAGCAAGTGTCTCCAAGAGTTCCAGCTGGCAATTATCCCGTTGCGCATGTCTCATATGATTTGAATGTCCTGGGTTCCAGGGGCCCAAGGATAATGCACTGTGTTATGGATGCCATCCCAGCTTCAGCTGTTGAGCCAGGAGGTCAAAATCCACTCGCTTGGAAAACTTCCAATCAGTTCCTTTGTCTTCCCAAAACAAGGGAATGCTGGTATTACAAAACAAGTCCCCTAGGTGGCATGAGCAACTCCAGTGTTGGTGTCTAA 849 0.4629 MRSRSQSHRDAGDHVLVGDGLRQSCWANMPPELLRDVLMRIEASEDTWPDRKHVVACAGVCRSWRGIMKEIVKSPELSGKLTLPISLKQPGPRNSLLQCYIKRHRSNQTYYLYLSLNQASVDDGKFLLAARKCRRPTHTDYIISINCEDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGTRVTKSRSTRPVSLKQVSPRVPAGNYPVAHVSYDLNVLGSRGPRIMHCVMDAIPASAVEPGGQNPLAWKTSNQFLCLPKTRECWYYKTSPLGGMSNSSVGV 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0487 282 CDD F-box_AtTLP-like 26 70 - -
Acco06g0487 282 SUPERFAMILY Tubby C-terminal domain-like 75 250 IPR025659 -
Acco06g0487 282 Gene3D Tubby Protein; Chain A 86 269 IPR025659 -
Acco06g0487 282 Pfam F-box domain 26 72 IPR001810 GO:0005515
Acco06g0487 282 PRINTS Tubby superfamily signature 206 233 IPR000007 -
Acco06g0487 282 PRINTS Tubby superfamily signature 141 157 IPR000007 -
Acco06g0487 282 PRINTS Tubby superfamily signature 157 181 IPR000007 -
Acco06g0487 282 PANTHER TUBBY-RELATED 5 246 - -
Acco06g0487 282 Pfam Tub family 87 244 IPR000007 -
Acco06g0487 282 SUPERFAMILY F-box domain 20 269 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0487 Acco-ChrAcco06 3035449 3037749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0487 4 246 TUB Transcription Factor Family AT2G47900 75.918 2.96e-135 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Acco06g0487 Tub 3.7e-53 CL0395