Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0410 ATGGCTTTCGAGCCTGTTAGTTTTACACGCTCCCTCTTCCTTCTGCTTTCATTCTTCGCACTGTCATCTCTAGCAGATAACCCTGCGGCCTCCCACGTAATCCCTCCTGACGCACTTTGTGACTCCACCAGGTACCCTGCTCTTTGCAAAACAGTGCTCGGTAATCAAAACGGCACCGTATTTGACTTTGGCCGCATATTGCTTCGAAGGTCCTTATCCCAGTCTCAGGTACTCCCGAACCAGGTGGATTCCTATCTGCAATCTTCGTCCTCTCTGTCTGAGCCCGCCATTGGAGCTCTCAAGGATTGTAGCTTCCTCGCTGGCCTAAACATCGAGTTCTTATCTGACACCCTGAACGCTGTGCAAAATCTCAATGACTCCCTGTCTCCCTCTCAAGCCCAAGACCTTGAAACCCTGTTCAGTGCCGTCCTCACCAACCACCAAACATGTCAGGATGGCCTAAAAACCACTGCTTCCGATGGAAGAGTAAAGGACGATCTTTCTTCCTCGCTCCCTAACGACTCCAAGCTTCACAGCGTGTCTCTTGCTCTCTTCACCAAAGGTTGGGTGCCCCAGAAGAATACCACAACCTCATGGCCAAACAATCGGAGGCTTTTGGATTTCAGCAATAGTCGTTTGCCATTGGAAATAGAACTGCTCCAGTCCGTCAACGGAAGTGTGGTTGTCACTGGCTCCGTGGTTGTCAGTCAGGATGGAAGCGGAAACTTCACCACCATCAACGATGCCATCAACGCTGCCCCTAACAACACAGCTTCCGGTGCCGGTTACTTCTTGATATTCATCACCGCTGGGGTGTACCAAGAATACGTATCCATACCCAAATACAAACAGTACTTGATGCTAGTGGGAAATGGCATCAACCGCACCATCATCACCGGCGACCACAACGTCGTCGATGGTTATACAACATTCAACTCCGCGACATTTGCCGTCGTGGCACAAGGATTCGTGGCGGTGAACATTACCTTCCGTAACACAGCAGGGGCGATCAAGCACCAAGCCGTTTCCATGAGAAGCGGGGCAGACTTGTCAGTTTTCTACCTCTGTAGCTTCGAAGGGTACCAAGACACTCTTTACACACATTCTATGAGGCAATTCTACAGACAGTGTGACGTATATGGAACCGTTGACTTCATATTCGGAAACGCGGCCGTGGTTATGCAAAACTGCAATCTGTATCCCCGGCTTCCGTTGAGCGGTCAGTTCAATACCATCACGGCGCAGGGTAGAACGGACCCCGGTCAGAACACAGGCACGTCTATTGAGAACGCGACCATAAAAGCGGCCGACGATTTGGCTCCTGTCATCGATCCTGCAGGTTGGCACGACTGGAACGGCACCTTTGCCTTGAGCACGTTGTACTACGCGGAGTATAATAACAGTGGGCCCGGTTCTAACACGAGTAACAGGGTGACGTGGCCATGTTACCACGTCATCAATGCCACGGATGCGGTTAATTTCACGGTGGCTAACTTCTTGATCGGGGATGCTTGGTTGCCTCCAACTGGGGTTCCTTGCTGTTCCGGATTTGCCTCCTAA 1560 0.5122 MAFEPVSFTRSLFLLLSFFALSSLADNPAASHVIPPDALCDSTRYPALCKTVLGNQNGTVFDFGRILLRRSLSQSQVLPNQVDSYLQSSSSLSEPAIGALKDCSFLAGLNIEFLSDTLNAVQNLNDSLSPSQAQDLETLFSAVLTNHQTCQDGLKTTASDGRVKDDLSSSLPNDSKLHSVSLALFTKGWVPQKNTTTSWPNNRRLLDFSNSRLPLEIELLQSVNGSVVVTGSVVVSQDGSGNFTTINDAINAAPNNTASGAGYFLIFITAGVYQEYVSIPKYKQYLMLVGNGINRTIITGDHNVVDGYTTFNSATFAVVAQGFVAVNITFRNTAGAIKHQAVSMRSGADLSVFYLCSFEGYQDTLYTHSMRQFYRQCDVYGTVDFIFGNAAVVMQNCNLYPRLPLSGQFNTITAQGRTDPGQNTGTSIENATIKAADDLAPVIDPAGWHDWNGTFALSTLYYAEYNNSGPGSNTSNRVTWPCYHVINATDAVNFTVANFLIGDAWLPPTGVPCCSGFAS 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0410 519 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 187 IPR035513 -
Acco06g0410 519 Pfam Pectinesterase 233 441 IPR000070 GO:0030599|GO:0042545
Acco06g0410 519 CDD PMEI-like_3 38 189 - -
Acco06g0410 519 ProSitePatterns Pectinesterase signature 2. 379 388 IPR033131 -
Acco06g0410 519 Gene3D - 227 517 IPR012334 -
Acco06g0410 519 SUPERFAMILY Pectin lyase-like 229 513 IPR011050 -
Acco06g0410 519 FunFam Putative pectinesterase 57 229 431 - -
Acco06g0410 519 NCBIfam pectinesterase inhibitor domain 12 186 IPR006501 GO:0004857
Acco06g0410 519 SMART PMEI_2 31 184 IPR006501 GO:0004857
Acco06g0410 519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 187 IPR035513 -
Acco06g0410 519 PANTHER PECTINESTERASE 36 507 - -
Acco06g0410 519 Pfam Plant invertase/pectin methylesterase inhibitor 38 184 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0410 Acco-ChrAcco06 2562512 2564519 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0410 12 519 Carbohydrate Esterase AT1G02810 51.635 0.0 553